| RGAP LOCUS ID |
LOC_Os03g43480 |
| RAP-DB ID |
Os03g0635100 |
| Function |
AGG2, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
7 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
2.757 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.08 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
73 |
| confidence value |
0.26 |
| Number Of Software Predicting Nucleus |
2 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
RGG1 |
| Function assigned as per literature |
RGG1 funtions in providing salinity stress tolerance in rice by elevating detoxification of ROS |
| Subcellular localization as per literature |
Plasma membrane and cytoplasm when interacted with PMCA or with other interacting partners |
| Cells used for localization experiment |
Onion epidermal cells |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
27785615 |
| Reference of localization |
https://link.springer.com/article/10.1007%2Fs00425-016-2614-3 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.128 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os03g43480.1 protein
MQAGGGGDAGDTRGRHRIQAELKKLEQEARFLEDLYQSPEKQKCSSVSSNDWGLTVYSRVKTASGILLNTDAPSWGPV |
GO Analysis |
| 1 |
| GO Category |
Molecular Function |
| GO Term |
molecular_function |
|
| 2 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
intracellular |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plasma membrane |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
transport |
|
| Presence of Splice variants |
No |
