LOC_Os03g43410

Expression Profile

RGAP LOCUS ID LOC_Os03g43410
RAP-DB ID Os03g0633800
Function OsIAA12 - Auxin-responsive Aux/IAA gene family member, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 9

2) CELLO Prediction
localization Nuclear
score 2.376

3) NUCPRED Prediction
localization Non Nuclear
score 0.31

4) Y-Loc Prediction
localization Nuclear
score 98.29
confidence value 0.61
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category AUX/IAA

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsIAA12
Function assigned as per literature OsIAA12 interacts with OsARF17 to regulate lamina joint development
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 30496185
Reference of localization https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1007829
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.128
NLS score -0.04
Protein Sequence >LOC_Os03g43410.1 protein
MEAAVGYAADSLIKATELRLGLPGTADDLPSTPRGKKRAAAAEDNNANAAAADDDEHDAVEAAPPVAKAQVVGWPPVRSYRKSCFQQQSAAASKSKAAVS
SCNNKDEPITKNAAPAPAASSAAAANGGSLVKVSMDGAPYLRKIDLRMYKGYRELREALEAMFVCFSGAADGANPSEFAITYQDKDGDLMLVGDVPFDMF
TSTCKKLRIMKRSEATGLGSPRQMKI

GO Analysis
1
GO Category Biological Process
GO Term response to endogenous stimulus
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
6
GO Category Cellular comBiological Processonent
GO Term cytoplasm
Presence of Splice variants No