LOC_Os03g42750
| RGAP LOCUS ID | LOC_Os03g42750 | ||||
| RAP-DB ID | Os03g0625700 | ||||
| Function | roothairless 1, putative, expressed | ||||
Sub-cellular Localization Predictions |
|||||
1) WoLF-PSORT Prediction |
|||||
| localization | cyto | ||||
| score | 7 | ||||
2) CELLO Prediction |
|||||
| localization | Nuclear | ||||
| score | 1.944 | ||||
3) NUCPRED Prediction |
|||||
| localization | Non Nuclear | ||||
| score | 0.47 | ||||
4) Y-Loc Prediction |
|||||
| localization | Chloroplast | ||||
| score | 2 | ||||
| confidence value | 0.05 | ||||
| Number Of Software Predicting Nucleus | 1 | ||||
| Seed Specific | No | ||||
| Transcription factor category | |||||
Experimental evidence for subcellular localization |
|||||
| Published gene name (updated 1 January 2020) | OsSEC3A | ||||
| Function assigned as per literature | OsSEC3A is involved in defense responses in rice | ||||
| Subcellular localization as per literature | Plasma membrane | ||||
| Cells used for localization experiment | Root epidermal cells of OsSEC3A transgenic seedlings and Nicotiana benthamiana leaves | ||||
| NUCLEAR or Not Nuclear | NOT NUCLEAR | ||||
| PMID | 29373713 | ||||
| Reference of localization | https://academic.oup.com/jxb/article/69/5/1051/4782276 | ||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
|||||
| Number of PAT4 | 0 | ||||
| Number of PAT7 | 0 | ||||
| Number of Bipartite | 1 | ||||
| Basic residues % | 0.127 | ||||
| NLS score | 0.02 | ||||
| Protein Sequence | >LOC_Os03g42750.1 protein MAKSSADDAELRRACAQAVAASGARGEEVSFSIRVAKGRGIFEKLGRLAKPRVLALTVKQSTKGEAAKAFLRVLKYSSGAVLEPAKLYKLKHLTKVEVIS NDPSGCTFVLGFDNLRSQSVAPPQWTMRNIDDRNRLLFSILTMCKEILSYLPKVVGIDFVELALWAKENTVTLDNQSSTQDGQEKSVTTQTERKVTVTVE NDLVSQAKDEEEDMEALLDTYVMGIGEADAFSERLKQELVALEAANVYQLLQSEPLIDEVLQGLDAASATVDDMDEWLRIFNMKLRHMREDIASIESRNN GLEMQSVNNKGLVEELEKLLDRLRIPQEFAASLTGGSFEESRMLKNVEACEWLTGAIRSLEVPNLDPCYVNMRAVREKRAELEKLKTTFVRRASEFLRNY FSSLVDFMISDKSYFSQRGQLKRPDHADLRYKCRTYARLLQHLKSLDKSCLGPLRKAYCHSLNLLLRREAREFANELRASTKAPKNPAVWLEGSNSGGQN GSSADTSTVSDAYSKMLTIFIPLLVDESSFFAHFMCFEVPALVPAGAPNAKSRSGGNDPDDDLNLMDPDGNDLKPDDTSAELGTLNDALQELLDGIQEDF YAVVDWAYKIDPLRCISMHGITERYLSGQKADAAGFVRRLLHDLESRISTQFSRFIDEACHQIERNERNVRQTGILAYIPRFAVLASRMEQYIQGQSRDL IDKAYTKLVSTMFTTLDKIAHSDPKTADIVLIENYAAFQNSLYDLANVVPTLAKFYHEASESYEQACTRHISSLIYLQFERLFQFSRKVDELTYTIAAEE IPFQLGLSKTDLRRVIKSSLSGIDKSIGAMYRRLQKTLTSDELFPSLWDKCKKEFLDKYESFVQMVTRIYGNEPIMSVADMKDVLANF |
||||
GO Analysis |
|||||
| 1 |
|
||||
| 2 |
|
||||
| 3 |
|
||||
| Presence of Splice variants | YES | ||||