LOC_Os03g40020
| RGAP LOCUS ID | LOC_Os03g40020 |
| RAP-DB ID | Os03g0597200 |
| Function | PPR repeat containing protein, expressed |
Sub-cellular Localization Predictions |
|
1) WoLF-PSORT Prediction |
|
| localization | chlo |
| score | 12 |
2) CELLO Prediction |
|
| localization | Cytoplasmic |
| score | 2.559 |
3) NUCPRED Prediction |
|
| localization | Non Nuclear |
| score | 0.09 |
4) Y-Loc Prediction |
|
| localization | Chloroplast |
| score | 9 |
| confidence value | 0.45 |
| Number Of Software Predicting Nucleus | 0 |
| Seed Specific | No |
| Transcription factor category | |
Experimental evidence for subcellular localization |
|
| Published gene name (updated 1 January 2020) | YSA |
| Function assigned as per literature | |
| Subcellular localization as per literature | chloroplast |
| Cells used for localization experiment | rice protoplast |
| NUCLEAR or Not Nuclear | NOT NUCLEAR |
| PMID | 22430843 |
| Reference of localization | http://www.plantphysiol.org/content/159/1/227 |
| Is Subcellular localization evidence by author available ? | No |
Sequence Analysis |
|
| Number of PAT4 | 0 |
| Number of PAT7 | 0 |
| Number of Bipartite | 0 |
| Basic residues % | 0.109 |
| NLS score | -0.47 |
| Protein Sequence | >LOC_Os03g40020.1 protein MPRVCAAPRAPPPPCPCHVGVGPLRPRWRASRHGPLRAAGQEQLLTALREQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEM RREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA VLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQND HVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFN TLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPT PKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIME KVDLRESDVSAIRGYLKIRKFYDALATFGRFLEINNPQWSYR |
GO Analysis |
|
| Presence of Splice variants | No |