| RGAP LOCUS ID |
LOC_Os03g37970 |
| RAP-DB ID |
Os03g0576700 |
| Function |
ribosomal protein L13, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
12 |
2) CELLO
Prediction
|
| localization |
Cytoplasmic |
| score |
2.493 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.65 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
8 |
| confidence value |
0.21 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsiBBC1 |
| Function assigned as per literature |
OsiBBC1 is a light-responsive gene whose expression is modulated by light and developmental cues |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
Onion epidermal cells |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
14746913 |
| Reference of localization |
https://www.sciencedirect.com/science/article/pii/S0167478103002677 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
1 |
| Number of PAT7 |
2 |
| Number of Bipartite |
1 |
| Basic residues % |
0.245 |
| NLS score |
1.93 |
| Protein Sequence |
>LOC_Os03g37970.1 protein
MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAGRGFTLEELKAAGIPKKYAPTIGISVDHR
RKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTAEELATATQVQGDYMPIARGEKRSVEVVKVTDEMKAFKAYAKLRVERMNQRHVGARQKRAA
EAEKEEKK |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
ribosome |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cellular_component |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytosol |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
vacuole |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 7 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cell wall |
|
| 8 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleolus |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
translation |
|
| 10 |
| GO Category |
Molecular Function |
| GO Term |
structural molecule activity |
|
| 11 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plasma membrane |
|
| Presence of Splice variants |
No |
