LOC_Os03g31150

Expression Profile

RGAP LOCUS ID LOC_Os03g31150
RAP-DB ID Os03g0425000
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 13

2) CELLO Prediction
localization Nuclear
score 2.58

3) NUCPRED Prediction
localization Nuclear
score 0.82

4) Y-Loc Prediction
localization Nuclear
score 95.88
confidence value 0.35
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsAL1
Function assigned as per literature AL1, particularly the AL1a and AL1c isoforms, plays an essential role in chloroplast development in rice
Subcellular localization as per literature Chloroplast
Cells used for localization experiment Rice protoplast
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 27208287
Reference of localization http://www.plantphysiol.org/content/171/2/1182.long#F5
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 1
Number of Bipartite 1
Basic residues % 0.117
NLS score 1.27
Protein Sequence >LOC_Os03g31150.3 protein
MEAALLRPPPLAARGGVSIAIAFSVSRLPSAAAAAAAGKPRKLAPPACRCRATPQWQLDFLGAEADTEADGGDDDDDLDLDLSLPAETNDWCVRARRSAL
RSIEARGLSPSLQRMVASPKKKNKKKKSKKTNLKQKKAAEPKPPRDTDDDEDDEEEADDDLEALLAGGGELDDLELRVAQFADGMFDEKRQRNREQFIQT
LSAFSPAAPSNRSQEVSLNRSIVEARTADEVLALTAEVVAAVAKGLSPSPLTPLNIATALHRIAKNMEAVSMLQTHRLGFARSRDMSMLVGLAMVALPEC
SPQGVSNISWALSKIGGDLLYLPEMDRIAQVAITKVDSFNAQNVANVAGSFASMRHSAPDLISALTRRAAELVYTFKEQELAQFLWGCASLNECPYPLLD
ALDTACRDAPSFDCHLHDTVPGMWQSSDKEASSLKNSSNAYALNFTRDQIGNIAWSYAVLGQMDRPFFSGIWKTLSQFEERKISDQYREDMMFVSQVYLA
NQSLKLEYPHLDMCLRGDLEENLTKTGRSKRFNQKMTSSFQKEVGRLLCSTGHEWNKEYTIDGYTVDAVLVDEKLAFEIDGPSHFSRNLGTPLGHTAFKR
RYIAAAGWNLVSLSHQEWENLEGEFEQLEYLRRILGFDAE

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES