| RGAP LOCUS ID |
LOC_Os03g29810 |
| RAP-DB ID |
Os03g0411500 |
| Function |
OsClp6 - Putative Clp protease homologue, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
11 |
2) CELLO
Prediction
|
| localization |
PlasmaMembrane |
| score |
1.717 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.13 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
9 |
| confidence value |
0.92 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
VYL|NAL9 |
| Function assigned as per literature |
VYL has role in assembly of plastid caseinolytic protease in higher plants |
| Subcellular localization as per literature |
Chloroplasts |
| Cells used for localization experiment |
rice protoplasts |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
23803583 |
| Reference of localization |
http://www.plantphysiol.org/content/plantphysiol/early/2013/06/26/pp.113.217604.full.pdf |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.097 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os03g29810.1 protein
MAPMAISTPLALRASPTRLLSRRRSGAKSGVALPGPQFVPPGISSKLDERIHCHSSLRKNTIVASENENPPLMPAIMTPAGALDLATVLLGNRIIFIGQY
INSQVAQRVISQLVTLAAVDEEADILIYLNCPGGSLYSILAIYDCMSWIKPKVGTVCFGVVASQAAIILAGGEKGMRYAMPNARVMIHQPQGVSEGNVEE
VRRQVGETIYARDKVDKMFAAFTGQTLDMVQQWTERDRFMSSSEAMDFGLVDALLETRY |
GO Analysis |
| 1 |
| GO Category |
Molecular Function |
| GO Term |
hydrolase activity |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
cellular component organization |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
thylakoid |
|
| 6 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
photosynthesis |
|
| Presence of Splice variants |
No |
