LOC_Os03g29614

Expression Profile

RGAP LOCUS ID LOC_Os03g29614
RAP-DB ID Os03g0410000
Function myb-like DNA-binding domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 8

2) CELLO Prediction
localization Nuclear
score 3.224

3) NUCPRED Prediction
localization Non Nuclear
score 0.52

4) Y-Loc Prediction
localization Nuclear
score 98.66
confidence value 0.42
Number Of Software Predicting Nucleus 3
Seed Specific Yes
Transcription factor category MYB

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) Osmyb3
Function assigned as per literature SMZ-6
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear NUCLEAR
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.109
NLS score -0.16
Protein Sequence >LOC_Os03g29614.1 protein
MGRKPCCSKEGLNRGAWTAMEDDILVSYIAKHGEGKWGALPKRAGLKRCGKSCRLRWLNYLRPGIKRGNISGDEEELILRLHTLLGNRWSLIAGRLPGRT
DNEIKNYWNSTLSKRVAMQRTAAATSMPAAATTSSNADAAGAAARRRRSPEPRTVVVSPIRTKALRCNNNSSSGIVVVQQAGACSHGGRPPESGAPGDAA
ADKVATPQAVQQQQQQELAGAEDDDDLPVPAVCIDLDLDDIELGGLDGFLISPWRGGGHDDGNAAAGAVPNLPMPIGYELGGAGGGGEAGAVDLEALLGQ
LEAEEDDDGDHHHHHHHHHHQ

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Biological Process
GO Term secondary metabolic process
4
GO Category Molecular Function
GO Term DNA binding
5
GO Category Cellular comBiological Processonent
GO Term nucleus
6
GO Category Molecular Function
GO Term protein binding
7
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
8
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No