LOC_Os03g29250

Expression Profile

RGAP LOCUS ID LOC_Os03g29250
RAP-DB ID Os03g0406100
Function SPX domain-containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear_plas
score 5

2) CELLO Prediction
localization Nuclear
score 2.348

3) NUCPRED Prediction
localization Non Nuclear
score 0.44

4) Y-Loc Prediction
localization Nuclear
score 99.99
confidence value 0.97
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSPX5
Function assigned as per literature SPX genes is beneficial to plants recovering Pi homeostasis after Pi starvation by PHR2 pathway
Subcellular localization as per literature Nucleus and cytoplasm
Cells used for localization experiment rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 24368504
Reference of localization https://academic.oup.com/jxb/article/65/3/859/525484
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.117
NLS score -0.47
Protein Sequence >LOC_Os03g29250.1 protein
MKFGKRLKRQIEESLPEWRDHFLNYKELKRRLNAVSSPDPAAEARFLALLHAEVDKFNAFFLEQEEDFVIRQRELQERIQSSSSAAAEMEGRVRREVVDL
HGEMVLLLNYSSINYTGLAKILKKYDKRTGGVLRLPVIAGVLRQPFYATDLLSSLVRDCEAIMDAVFPSLPSPSAAAAAAARAAAEQAIFRNTVAALLTM
QEVRSGSSTYGHFSLPPMTPLPDSDWLIQSVQPPPPPPPSSPLIIPT

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Biological Process
GO Term response to extracellular stimulus
4
GO Category Biological Process
GO Term cell communication
5
GO Category Biological Process
GO Term response to stress
Presence of Splice variants No