LOC_Os03g26870

Expression Profile

RGAP LOCUS ID LOC_Os03g26870
RAP-DB ID Os03g0386000
Function WD-40 repeat family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 5

2) CELLO Prediction
localization Nuclear
score 1.137

3) NUCPRED Prediction
localization Non Nuclear
score 0.31

4) Y-Loc Prediction
localization Chloroplast
score 8
confidence value 0.54
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SRWD5
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.114
NLS score 0.22
Protein Sequence >LOC_Os03g26870.1 protein
MASTPPPPLQPPRRTSRWTIPWERLNYSRNQYREMRLRQYKNYENLTMPRDGLEKECKQVERKDTFYDFHLNTRLVKSTIVHFQLRNLLWATSKHDVYLM
QNYSVMHWSSLLQRGKEVLNVAGQLAPSQNVRGAMPLSRVQISTMAVKGNLMVAGGFQGELICKYVDKPGVAFCTNLTGNNNSITNAVDIYQAPNGGTRI
TTANNDCVVRTFDTERFSLISHFAFPWSVNNTSVSPDGKLLAVLGDSSDCLIADSQSGKEMARLKGHLDYSFSSAWHPDGRVVATGNQDRTCRVWDVRNM
SRSVAVLEGRIGAVRGLRYSPDGRFLAASEPADFVHVYDAAAGYADAQEIDLFGEIAGVAFSPAGNNGGGGEALFVSIADRTYGSLLEFHRRRRHGYLDC
YV

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term intracellular
2
GO Category Molecular Function
GO Term molecular_function
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES