| RGAP LOCUS ID |
LOC_Os03g26210 |
| RAP-DB ID |
Os03g0379300 |
| Function |
helix-loop-helix DNA-binding domain containing protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
10 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
3.841 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.66 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
99.8 |
| confidence value |
0.92 |
| Number Of Software Predicting Nucleus |
3 |
| Seed Specific |
No |
| Transcription factor category |
bHLH |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsIRO3|OsOsbHLH063 |
| Function assigned as per literature |
A negative regulator of the Fe deficiency response in rice |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
onion epidermal cells |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
20699001 |
| Reference of localization |
https://bmcplantbiol.biomedcentral.com/articles/10.1186/1471-2229-10-166 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
2 |
| Basic residues % |
0.117 |
| NLS score |
0.51 |
| Protein Sequence |
>LOC_Os03g26210.1 protein
MGSFLVDWFSAGNGRGRFLEEAMVPSERGDVATAIRPAAADKLVHGPISDKKCRKKVPRKVHKSEREKLKRGHLNDLFGELGNMLEADRQSNGKACILTD
TTRILRDLLSQVKSLRQENSTLQNESNYVTMERNELQDENGALRSEISDLQNELRMRATGSPGWGHGATGSPLPVPPSPGTVFPSQQPMQPSPMTTSTVF
PLQQPLPQPTVIEPSARQPLELKLFLEAPPAEDPEPSEDQEAPNNVARPQPRYPTEASSWPISLGLPRMEDEQM |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
response to extracellular stimulus |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
cell communication |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
biological_process |
|
| 5 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 6 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| 10 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| Presence of Splice variants |
YES |
