LOC_Os03g25390
| RGAP LOCUS ID | LOC_Os03g25390 | ||||
| RAP-DB ID | Os03g0369800 | ||||
| Function | novel plant SNARE 11, putative, expressed | ||||
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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| localization | plas | ||||
| score | 7 | ||||
2) CELLO Prediction |
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| localization | Nuclear | ||||
| score | 3.869 | ||||
3) NUCPRED Prediction |
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| localization | Non Nuclear | ||||
| score | 0.44 | ||||
4) Y-Loc Prediction |
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| localization | Nuclear | ||||
| score | 71.99 | ||||
| confidence value | 0.91 | ||||
| Number Of Software Predicting Nucleus | 2 | ||||
| Seed Specific | No | ||||
| Transcription factor category | |||||
Experimental evidence for subcellular localization |
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| Published gene name (updated 1 January 2020) | OsNPSN12 | ||||
| Function assigned as per literature | OsNPSNs are involved in different aspects of the signal transduction in plant and yeast responses to abiotic stresses | ||||
| Subcellular localization as per literature | plasma membrane | ||||
| Cells used for localization experiment | onion epidermal cells | ||||
| NUCLEAR or Not Nuclear | NOT NUCLEAR | ||||
| PMID | 18197419 | ||||
| Reference of localization | https://link.springer.com/article/10.1007/s00438-007-0313-2 | ||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
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| Number of PAT4 | 0 | ||||
| Number of PAT7 | 0 | ||||
| Number of Bipartite | 0 | ||||
| Basic residues % | 0.117 | ||||
| NLS score | -0.47 | ||||
| Protein Sequence | >LOC_Os03g25390.2 protein MASDVPMSPELEQIDGEVQDIFRALQNGFQKMDKIKDSSRQAKQLEDLTAKMKECKRLIKEFDRILKDEESNNPPEVHKQLNDRKQYMIKELNSYVTLRK TYQSSLGNNNKRVELFDMGAGSSEPAAEDNIQIASAMTNQQLMDAGREQMTQTDQAIDRSKMVVAQTIETGTQTASALSQQVSFSTLHTIQDFPVTCLFW QSGILVCLVCNLVQQISFALQTEQMKRIGNELDTVHFSLKKASQLVKEIGRQVATDKCIMALLFLIVCGVIAIIVVKIVNPHNKNIRDIPGLAPPAQNFQ ISNRRLLSVEIIRGL |
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GO Analysis |
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| 1 |
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| 2 |
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| Presence of Splice variants | YES | ||||