LOC_Os03g22600

Expression Profile

RGAP LOCUS ID LOC_Os03g22600
RAP-DB ID Os03g0347700
Function BTBN6 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 7

2) CELLO Prediction
localization Chloroplast
score 1.422

3) NUCPRED Prediction
localization Non Nuclear
score 0.31

4) Y-Loc Prediction
localization Chloroplast
score 7
confidence value 0.13
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) WIN1
Function assigned as per literature WIN1 leads to asymmetrical distribution of auxin and a spiral phenotype in rice
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Onion epidermal cells and transgenic rice plant cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28922746
Reference of localization https://academic.oup.com/pcp/article/58/9/1494/3918961
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 0
Number of Bipartite 1
Basic residues % 0.121
NLS score 0.52
Protein Sequence >LOC_Os03g22600.1 protein
MGVATVTELRQSFSGKRALRPTLTSRHANEWPPTDVSSDLTVEVGTSSFALHKLLAQFPLVSRSGKIRRAVAEAKDGKLARLGLHGTPGGAAAFELAAKF
CYGVGVDVTVGNVAMLRCAAHYLQMTEDFSDKNLELRAEAFLRDAVLPSIAGSVAVLRSCEALLPAAEDVNLVPRLIAAIANNVCKEQLTSGLSKLDQLK
PPPPPQAVVVAAAAAGDLDSPGDWWGKSVAGLGLDFFQRLLSAVKSKGLKQETVTRILINYAQNSLHGLMARDIAAAAKCGGGGGDTDAVKKQRAVVETI
VGLLPAQSKKSPVPMAFLSGLLKTAMAASASSICRADLEKRIGMQLDQAILEDILVAAGPVSAAAAAAAVEHTLYDTDVVARIFAVFLNLDDDSNDEDAV
VVGGGCGAFDYDSPRSPKQSLLVKASKLLDSYLAEIALDSNLLPSKFISLAELLPDHARLVTDGLYRAVDIFLKVHPNIKEAERYRMCKAIDCQRLTPDA
CSHAAQNERLPVQMAVQVLYFEQLRLRSAIQATGTTTTTTNTSIGGAHDAALFFGCAAAAAAPRSGSGVGSGAMSPRDSYASVRRENRELKLEVARMRMR
LTDLEKDQVSMRRELVRVGPANRLLRGLARRLGSLFHFRGAAAEPGLQQLGAKATADAKVLFQRRRRHSIS

GO Analysis
1
GO Category Biological Process
GO Term signal transduction
2
GO Category Biological Process
GO Term response to abiotic stimulus
3
GO Category Molecular Function
GO Term signal transducer activity
4
GO Category Biological Process
GO Term pollination
5
GO Category Biological Process
GO Term cellular component organization
6
GO Category Biological Process
GO Term anatomical structure morphogenesis
7
GO Category Biological Process
GO Term cell differentiation
8
GO Category Biological Process
GO Term cell growth
9
GO Category Biological Process
GO Term multicellular organismal development
Presence of Splice variants No