LOC_Os03g22450

Expression Profile

RGAP LOCUS ID LOC_Os03g22450
RAP-DB ID Os03g0345100
Function auxin response factor 75, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 7

2) CELLO Prediction
localization Nuclear
score 2.837

3) NUCPRED Prediction
localization Non Nuclear
score 0.26

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.12
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRad9
Function assigned as per literature Rad9 might involve in the development of pollen
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 28301324
Reference of localization https://www.degruyter.com/view/j/znc.2017.72.issue-7-8/znc-2016-0257/znc-2016-0257.xml
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.081
NLS score -0.47
Protein Sequence >LOC_Os03g22450.1 protein
MELSMSGGALRTFTRCVTCLARVGSDLVLQAHPAKLELHTLNSSRSAYASISLARDFFDEFSLSAAAAADSAPSSTPLQCSVLLKSVLSVLRTPTAALDR
IAASLPNPDAPKLQLTLHCLNGVKKTYWIACSAESEVQTLALDRSNFSSRLAIRPRDLARLLSNFQSSLQELTVIATDPAAGLSNVGVDGEIEGKAVELR
SYIDPTKDDCDTRLHTQLWIDPTEEFVEYVHSGDSVDVTFGVKELKAFLTFCEGCEVDILLFFQKAGEPVLLVPKFGLDDGSSSDFDATLVLATMLVSQL
TDSSVAQQPTTSAQRAEEPRVAATPPPVPENVSNHTKIWSELSGSAPKSFEVNREKYTQKERNANSNALNDTSMLHSVNARYKPPVADNANDTMQPMQMD
HLEEPPDVVSDNPRSQHHPSNWVGADEDDDDDEDEELFVQTTPHYMD

GO Analysis
1
GO Category Biological Process
GO Term response to stress
2
GO Category Biological Process
GO Term DNA metabolic process
Presence of Splice variants No