LOC_Os03g21800

Expression Profile

RGAP LOCUS ID LOC_Os03g21800
RAP-DB ID Os03g0336200
Function bZIP transcription factor family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 4.549

3) NUCPRED Prediction
localization Non Nuclear
score 0.59

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 1
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category bZIP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) RF2b|OsbZIP30
Function assigned as per literature RF2b, a rice bZIP transcription activator, interacts with RF2a and is involved in symptom development of rice tungro disease
Subcellular localization as per literature Nucleus
Cells used for localization experiment tobacco BY-2 protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 14704272
Reference of localization https://www.pnas.org/content/101/2/687.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 1
Basic residues % 0.122
NLS score 0.45
Protein Sequence >LOC_Os03g21800.1 protein
MQEPKHTDPAAMRGAHHRRARSEVAFRLPDDLDLGGGGAGAFDEIGSEDDLFSTFMDIEKISSGPAAAGGSDRDRAAETSSPPRPKHRHSSSVDGSGFFA
AARKDAAASLAEVMEAKKAMTPEQLSELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSAENAELKIRLQ
AMEQQAQLRDALNDALKQELERLKLATGEMTNSNETYSMGLQHVPYNTPFFPLAQHNAARQNGGTQLPPQFQPPRPNVPNHMLSHPNGLQDIMQQDPLGR
LQGLDISKGPLVVKSESSSISASESSSTF

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES