LOC_Os03g21370

Expression Profile

RGAP LOCUS ID LOC_Os03g21370
RAP-DB ID Os03g0331600
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 13

2) CELLO Prediction
localization Mitochondrial
score 2.388

3) NUCPRED Prediction
localization Non Nuclear
score 0.5

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.48
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) CS3
Function assigned as per literature CS3 geneencodes a Ycf54 domain-containing protein and may play a role in chlorophyll biosynthesis.
Subcellular localization as per literature Chloroplast
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 31128680
Reference of localization https://www.sciencedirect.com/science/article/pii/S0168945218311890
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.15
NLS score 0.77
Protein Sequence >LOC_Os03g21370.1 protein
MVAPATLSLRPFATLAPSRAALPRVGAGFALPPAVSCQPRRRRLSLRAVAVDSDQQGSPEPPDQEAKPKKYHFLVANAKFMLDEEEHFQEQLKEKLRLYG
EREKEQDFWLVVEPKFLDRFPNITKRLKRPAVALVSTDGNWITFMKLRLDRVLAEQFEAETLEEALASNPVDLKFDKPEKWTAPYPKYEYGWWEPFLPPK
SSNGTA

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Biological Process
GO Term biological_process
3
GO Category Cellular comBiological Processonent
GO Term thylakoid
4
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No