LOC_Os03g21240

Expression Profile

RGAP LOCUS ID LOC_Os03g21240
RAP-DB ID Os03g0329900
Function myb-like DNA-binding domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12

2) CELLO Prediction
localization Nuclear
score 4.071

3) NUCPRED Prediction
localization Non Nuclear
score 0.74

4) Y-Loc Prediction
localization Nuclear
score 95.48
confidence value 0.14
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category G2-like

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPHR1|PHR1
Function assigned as per literature OsPHR1 is involved in the Phosphate-Starvation signaling pathway
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 18263782
Reference of localization http://www.plantphysiol.org/content/146/4/1673.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.098
NLS score 0.27
Protein Sequence >LOC_Os03g21240.1 protein
MSSSLPILPKSLKDIPRSHNTQNILMPGQLPNDSMPLHQSATQSSISHPRASVVRSSYSAMLGYAANPIDSVSSHEGHFMAAPFISQSSNAEMLQYLCNN
NTHGGHTVPTFFPAPACGAPDYMDTITVPDNHTQSGSSTVTSDAAKQNEWWADIMNDDWKDILDATATDSQSKSMAQPSNSAASQPAFNQSTSSHSGDIC
PVTSPPPNNSNASASKQRMRWTPELHESFVHAVNKLGGSEKATPKGVLKLMKVDGLTIYHVKSHLQKYRTARYKPDLSEGKTQEGKTTDELSLDLKASMD
LTEALRLQMEVQKRLHEQLEIQRKLQLRIEEQGKYLQKMFEKQCKSSTQSVQDPSSGDTATPSEPSNSVDKDSEAALDPNRIGDNHPKNSTNVGANLKTA
ATESPDSPVIATDGSELPQEKRRRVHES

GO Analysis
1
GO Category Biological Process
GO Term biological_process
2
GO Category Biological Process
GO Term response to extracellular stimulus
3
GO Category Biological Process
GO Term cell communication
4
GO Category Biological Process
GO Term response to stress
5
GO Category Cellular comBiological Processonent
GO Term nucleus
6
GO Category Biological Process
GO Term biosynthetic process
7
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
8
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No