LOC_Os03g21080

Expression Profile

RGAP LOCUS ID LOC_Os03g21080
RAP-DB ID Os03g0328000
Function guanine nucleotide exchange factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 4

2) CELLO Prediction
localization Nuclear
score 1.552

3) NUCPRED Prediction
localization Non Nuclear
score 0.65

4) Y-Loc Prediction
localization Nuclear
score 58.71
confidence value 0.6
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSPK1
Function assigned as per literature OsSPK1 is a direct and key signaling target of Pit-mediated immunity
Subcellular localization as per literature subdomains of the ER or other endomembranes
Cells used for localization experiment tobacco leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 30446614
Reference of localization https://www.pnas.org/content/115/49/E11551.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.111
NLS score -0.22
Protein Sequence >LOC_Os03g21080.1 protein
MDKFAGVCQSILHDCKLTFLQIICDHDLFVEMPGRDPSDRNYLSSVLIQEIFLTLDHDDLSQRAKAARILVVLICKHEFDARYQKSEDKLYIAQLYFSLI
GQILDEMPVFYNLNAVEKREVLVVILQIIRNLDDMTLIKAWQQSIARTRLFFKLLEECITHFEHNKTGDSLLLGSSSRSPDAERPASPKYSDRLSPSVNA
YLSEASRHEIRPQGTPENGYMWNRVSPQLSSPNQPYSLREALAQAQSSRIGSTARALRESLHPVLRQKLELWEENLSTAVSLEVLGIIDKFSVAAASRSI
TTDYAKLDCVTSVLMGLLSRSQPLAFWKAFLPVVYNIFNLHGATLMARENDRFLKQIAFHLLRLAVFRNDSIRKRAVVGLQILVRNSFNYFKNTTRLRVM
LTITLSELMSDVQVTQMKSDGSLEESGETRCLRKSLEEMADVRSKDLLKDCGLPVNALEAAPEGSTDNRWSWVEVKHLSKCLVQALDAGLEHALLGSEMT
LDRYAAAEGFYKLAMAYAPVPDLHIMWLLHLCDAHQEMQSWAEAAQCAVAVAGVIMQALVGRNDAVWSKEHVASLCKICPIVNTDVSSEASAAEVEGYGA
SKLTVDSAVKYLQLANKLFAQAELYHFCASIQELIIPVYKSRRAYGHLAKCHTSLKDIYESILEQEASPIPFIDATYYRVGFYGERFGKLNKKEYVFREP
RDVRLGDIMEKLSHIYEAKMDGNHTLHIIPDSRQVNADELQPGVCYLQITAVDPVMEDEDLGSRRERIFSLSTGTVRARVFDRFLFDTPFTKNGKTQGGL
EDQWKRRTVLQTEGSFPALVNRLLVIKSESLEFSPVENAIGMIETRTAALRNELEEPRSSEGDQLPRLQSLQRILQGSVAVQVNSGVLSVCTAFLSGEPA
TRLRSQELQQLIAALLEFMAVCKRAIRVHFRLIGEEDQEFHTQLVNGFQSLTAELSHYIPAILSEL

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term endoplasmic reticulum
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Cellular comBiological Processonent
GO Term membrane
4
GO Category Molecular Function
GO Term enzyme regulator activity
5
GO Category Biological Process
GO Term metabolic process
6
GO Category Biological Process
GO Term transport
7
GO Category Biological Process
GO Term cellular process
8
GO Category Cellular comBiological Processonent
GO Term cytosol
9
GO Category Molecular Function
GO Term protein binding
10
GO Category Molecular Function
GO Term nucleotide binding
11
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants No