LOC_Os03g20910

Expression Profile

RGAP LOCUS ID LOC_Os03g20910
RAP-DB ID Os03g0325600
Function homeobox domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 9.5

2) CELLO Prediction
localization Nuclear
score 3.841

3) NUCPRED Prediction
localization Non Nuclear
score 0.58

4) Y-Loc Prediction
localization Nuclear
score 99.98
confidence value 0.92
Number Of Software Predicting Nucleus 3
Seed Specific Yes
Transcription factor category HB/WOX

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) WOX6
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.067
NLS score -0.47
Protein Sequence >LOC_Os03g20910.1 protein
MEGSSNSPDRQSSGGSPPEERGGGGSGGGGGRSAAGEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRR
RQRQMQAAAAAAAAAASSSSPSANTSPAAASAATVQVGLPPGAVVHTMAMGGSACQYEQQASSSSSSGSTGGSSLGLFAHGAGASGAGGYLQASCGASAS
ASSALAPGLMGDVVDSGGSDDLFAISRQMGFVGSPRCSPASSPATPSSAATAAQQQFYSCQLPAATITVFINGVPMEMPRGPIDLRAMFGQDVMLVHSTG
ALLPVNDYGILMQSLQIGESYFLVTIHLQALTSWSHRSLSTPISQCSFVFMKAPHF

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
5
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES