LOC_Os03g20460

Expression Profile

RGAP LOCUS ID LOC_Os03g20460
RAP-DB ID Os03g0320900
Function guanylate kinase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization mito
score 9

2) CELLO Prediction
localization Mitochondrial
score 1.456

3) NUCPRED Prediction
localization Non Nuclear
score 0.32

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.46
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) v2
Function assigned as per literature v2 is essential for chloroplast development
Subcellular localization as per literature Chloroplast and mitochondria
Cells used for localization experiment Root hair cells and protoplasts isolated from mature leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 17727616
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1365-313X.2007.03251.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.14
NLS score -0.47
Protein Sequence >LOC_Os03g20460.1 protein
MLLTRRFSSALARSPLLPRSLPPPRAVPATPPAPRPPPRRLMSSSSSGWHHSSRPPPPPPSGADKDQLFRGLEAALGTTFSSEPLAPPPQPMILVISGPS
GVGKDAVIQRLQEEREGMHFVVTATSRAKRPGEVDGKDYYFVTKEEFLTMIERKELLEYALVYGEYKGIPKQQIRDYMAKGYDIVLRVDIQGAATLREIL
GESAIFIFLVAESEEALVKRLIHRKTETSDMLLVRVATAREEVKRMNNFDYVVVNSEGNLEGAVKQVESIIDAEKAKVHKRTVNI

GO Analysis
1
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
2
GO Category Molecular Function
GO Term kinase activity
3
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES