LOC_Os03g19590

Expression Profile

RGAP LOCUS ID LOC_Os03g19590
RAP-DB ID Os03g0309200
Function phytochrome B, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 7.5

2) CELLO Prediction
localization Cytoplasmic
score 1.885

3) NUCPRED Prediction
localization Non Nuclear
score 0.4

4) Y-Loc Prediction
localization Chloroplast
score 6
confidence value 0.01
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) PHYB|OsphyB
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.098
NLS score -0.47
Protein Sequence >LOC_Os03g19590.1 protein
MASGSRATPTRSPSSARPAAPRHQHHHSQSSGGSTSRAGGGGGGGGGGGGGAAAAESVSKAVAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSE
QQIAAYLSRIQRGGHIQPFGCTLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVLLERAFAAREISLLNPLWIH
SRVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISRLQALPGGDVKLLCDTVVEYVRELTGYDRVMVYRFHEDEHGEVVAESRRN
NLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLRSPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNISRGSIP
SAMKLWGLVVCHHTSPRCIPFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYHGKYYPLG
VTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAAALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEV
VKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELSSVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSV
EEAMGKSLVNDLIFKESEETVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIV
HNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVGKLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTRS
RMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTNSLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDG
SLVLEKGEFSLGSVMNAVVSQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQVRPNIKQNSDGTDTMLFLFRFA
CPGEGLPPEIVQDMFSNSRWTTQEGIGLSICRKILKLMGGEVQYIRESERSFFHIVLELPQPQQAASRGTS

GO Analysis
1
GO Category Biological Process
GO Term signal transduction
2
GO Category Biological Process
GO Term response to abiotic stimulus
3
GO Category Molecular Function
GO Term receptor activity
4
GO Category Molecular Function
GO Term signal transducer activity
5
GO Category Biological Process
GO Term biosynthetic process
6
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
7
GO Category Biological Process
GO Term transport
8
GO Category Biological Process
GO Term cellular process
9
GO Category Biological Process
GO Term lipid metabolic process
10
GO Category Molecular Function
GO Term kinase activity
11
GO Category Biological Process
GO Term response to external stimulus
12
GO Category Molecular Function
GO Term protein binding
13
GO Category Biological Process
GO Term response to stress
14
GO Category Cellular comBiological Processonent
GO Term nucleus
15
GO Category Biological Process
GO Term protein modification process
16
GO Category Biological Process
GO Term post-embryonic development
17
GO Category Biological Process
GO Term cellular homeostasis
18
GO Category Biological Process
GO Term response to endogenous stimulus
19
GO Category Biological Process
GO Term tropism
20
GO Category Biological Process
GO Term cellular component organization
21
GO Category Biological Process
GO Term photosynthesis
Presence of Splice variants No