LOC_Os03g19520
| RGAP LOCUS ID | LOC_Os03g19520 | ||||
| RAP-DB ID | Os03g0308200 | ||||
| Function | cyclin-related protein, putative, expressed | ||||
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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| localization | chlo | ||||
| score | 9 | ||||
2) CELLO Prediction |
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| localization | Nuclear | ||||
| score | 2.689 | ||||
3) NUCPRED Prediction |
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| localization | Nuclear | ||||
| score | 0.81 | ||||
4) Y-Loc Prediction |
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| localization | Chloroplast | ||||
| score | 9 | ||||
| confidence value | 0.62 | ||||
| Number Of Software Predicting Nucleus | 2 | ||||
| Seed Specific | No | ||||
| Transcription factor category | |||||
Experimental evidence for subcellular localization |
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| Published gene name (updated 1 January 2020) | SRL2|AVB|NRL2|NRL3 | ||||
| Function assigned as per literature | NRL2 regulates leaf shape, male fertility, and seed size in rice | ||||
| Subcellular localization as per literature | Cytoplasm and cell membrane | ||||
| Cells used for localization experiment | Nicotiana benthamiana epidermal cells and rice protoplasts | ||||
| NUCLEAR or Not Nuclear | NOT NUCLEAR | ||||
| PMID | 27762074 | ||||
| Reference of localization | https://onlinelibrary.wiley.com/doi/epdf/10.1111/jipb.12503 | ||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
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| Number of PAT4 | 0 | ||||
| Number of PAT7 | 1 | ||||
| Number of Bipartite | 1 | ||||
| Basic residues % | 0.107 | ||||
| NLS score | 0.36 | ||||
| Protein Sequence | >LOC_Os03g19520.2 protein MGFMSAKLFPSCESMCVCCPALRPSSRRPVKRYKKLLAEIFPKTPDGLPNERKIMKLCEYAAKNPLRIPKIAKFLEQRSHKELRSAHVNFIKIITEAYSK LLFICKEQMAYFAISLVNVLTELLESKQENIHILGCQTLAKFIYSQVDNTYARNIESLVRKVCVLSRQQGVEHSLLRAASLQCLSAMIWFMKEHSYIFVD FDEIVQSVLENYRVEESAAGDEERHAPQHNWVDEIVRREGRAGLGGGNDVNCNSTAIRLRSARDSSALTREERESPEVWAHICVQKLAELAKESTTMRRI LDPMLSYFDKKKQWAPRQGLALLVLSDMSYLEKSSGNEQLILTSVIRHLDHKNVLYDPQIKSDMIQTATLLARQLRSRGIAAELVVAGDLCRHLRKTLEA MESASIEELNLNESLQNFLQDCLLEVVTGINDVRPLYDMMAITLENLPSMPVVARASIGSLLILSHIISLTSMSLNAPMQLFPEALLQQILKSMVHPDVD TRVGAHHMFSAVIVQGPSRQRSESDFLYETKKWQSRTTSVFASATALLEKLRREKESLGSDKTGNMDDEKEKSISEEENKHVWARKNSAYFSKLVFSFTD RYAALTSSAEEANIVMLTEDQKNQLLSAFWVQAIQTDNTPFNYEAIGHSYSLTVISSRLKDSRNSNNIQFFQLPLSLRSVSLTSNGVLSPSCQRSIFTLA TSMLAFAGKVCHITELFDVLRCFTSCNMDPYLRIGEDLQLYVRLQSDLGNYGSDSDQEIARSVLSDCRTKVGINDQRVLDVVACALCNLTEMDKDVLVKE LTEMFTPEEVPLFGSNSAFDWANFHVQAFSDESLSFDEECSRTSSVDGGLHESPITNTGSSISKTTMPQSVPRVLGVGQLLESALHVAGQVAGASVSTSP LPYGTMTSQCEALGSGTRKKLSSWLVNGHDSTPDNPAPSLPSAQHFIIPKVNSCGFESSIRTTLEPCSAVKLPPASPFDNFLKAAYRAQ |
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GO Analysis |
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| 1 |
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| 2 |
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| Presence of Splice variants | YES | ||||