LOC_Os03g19480

Expression Profile

RGAP LOCUS ID LOC_Os03g19480
RAP-DB ID Os03g0307800
Function SET domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 3.681

3) NUCPRED Prediction
localization Nuclear
score 0.81

4) Y-Loc Prediction
localization Nuclear
score 99.67
confidence value 0.82
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category SET

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsiEZ1|OsSET1|SDG718
Function assigned as per literature ver‐expression of the SET domain of OsSET1 in Arabidopsis resulted in altered shoot development at seedling stages
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 12815033
Reference of localization https://academic.oup.com/jxb/article/54/389/1995/534681
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.142
NLS score 0.47
Protein Sequence >LOC_Os03g19480.1 protein
MASSSSKASDSSSQRPKRPDQGPSGKDAAGLVALHGKLAQLKRQVQSTRLAAIKERVEANRKALQVHTCALFDVAAAAEVASRGAEGGNALSRGAAEGHR
RFVGWDSASGPGERELVHVQEENLVAGTLVLSSSGGSGASHRTVVQLVKLPVVDKIPPYTTWIFLDKNQRMADDQSVGRRRIYYDPIVNEALICSESDDD
VPEPEEEKHVFTEGEDQLIWKATQDHGLSREVLNVLCQFVDATPSEIEERSEVLFEKYEKQSQSSYKTDLQLFLDKTMDVALDSFDNLFCRRCLVFDCRL
HGCSQNLVFPSEKQPYGHELDENKRPCGDQCYLRRREVYQDTCNDDRNACTTYNMDSRSSSLKVSATILSESEDSNRDEDNIKSTSIVETSRSKITNSEY
ADKSVTPPPGDASETENVSPDMPLRTLGRRKISKHASKSNDHSPDKRQKIYSSPFPFAMSVLNKQSVPEIGETCPDSIESAVDQLPSLDDPNKKISTKDM
CAGSTTNTTENTLRDNNNNLFISNKEHSISHWSALERDLYLKGIEIFGKNSCLIARNLLSGLKTCMEVASYMYNNGAAMAKRPLSGKSILGDFAEAEQGY
MEQDLVARTRICRRKGRARKLKYTWKSAGHPTVRKRIGDGKQWYTQYNPCGCQQMCGKDCACVENGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPC
FAASRECDPDVCRNCWVSCGDGSLGEPLARGDGYQCGNMKLLLKQQQRILLGKSDVAGWGAFIKNPVNRNDYLGEYTGELISHREADKRGKIYDRANSSF
LFDLNEQYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIYAKDRIEASEELFYDYRYGPDQAPAWARRPEGSKKDEASVSHHRAHKVAR

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Biological Process
GO Term regulation of gene expression, epigenetic
6
GO Category Biological Process
GO Term response to stress
7
GO Category Biological Process
GO Term response to abiotic stimulus
8
GO Category Molecular Function
GO Term protein binding
9
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
10
GO Category Biological Process
GO Term reproduction
11
GO Category Biological Process
GO Term post-embryonic development
12
GO Category Molecular Function
GO Term RNA binding
Presence of Splice variants No