| RGAP LOCUS ID |
LOC_Os03g19380 |
| RAP-DB ID |
Os03g0306800 |
| Function |
calvin cycle protein CP12, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
14 |
2) CELLO
Prediction
|
| localization |
Extracellular |
| score |
1.377 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.15 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
5 |
| confidence value |
0.08 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsCP12 |
| Function assigned as per literature |
OsCP12 interacts with OsRP1 and OsCTR1 in cytosol, and ubiquitination by OsCTR1 led to protein degradation via the Ub 26S proteasome |
| Subcellular localization as per literature |
OsCP12 is colocalized with OsRP1 and OsCTR1 in chloroplast |
| Cells used for localization experiment |
rice protoplast |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
24215658 |
| Reference of localization |
https://onlinelibrary.wiley.com/doi/pdf/10.1111/pce.12219 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.107 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os03g19380.1 protein
MATILAVAAMATFQAPTTLPGPLAPTLPVRRNVVSFAGRRQGRALGRLAVVVAAGSPTPPELAQKVSESIKQAEETCAGDPEGGECAAAWDEVEELSAAA
SHARDRKKDSDPLEEYCKDNPETDECRTYED |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
carbohydrate metabolic process |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
photosynthesis |
|
| 4 |
| GO Category |
Molecular Function |
| GO Term |
molecular_function |
|
| 5 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 6 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| Presence of Splice variants |
No |
