LOC_Os03g19080

Expression Profile

RGAP LOCUS ID LOC_Os03g19080
RAP-DB ID Os03g0302900
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12

2) CELLO Prediction
localization Nuclear
score 4.071

3) NUCPRED Prediction
localization Nuclear
score 0.92

4) Y-Loc Prediction
localization Nuclear
score 95.59
confidence value 0.65
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SSD1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 1
Basic residues % 0.14
NLS score 0.45
Protein Sequence >LOC_Os03g19080.3 protein
MGTEKGGAKIGGGGGGGGGGGGGGGLFNLFDWKRKSRKKLFSNSPEGAKLVKRGEETLPSGRLHLIDDDEGIGVSSFKGSSDYSCASSVTDEEGREMKAP
GVVARLMGLDAMPSTGVPEPYCTPFRDTRSFRDSQSLKRSPEYSGSDQFSYVPRRVDGYMRKPLDLRAQKMPSSPIERFQIETLPPRSAKPLPMSHHRLL
SPIKNPGFSSARNAAQIMEAAAKILEPRPQVSSREKICSYSPARIPLRISETRENIPASQRAVSRQLQSSRTNLELPDVRFSRGQQMNRSWNSEDDIVIF
RTSSDSYEINNPGFSKNNKGKSISLALQAKVNVQKREGLGSSGKNSGGQKDRDECRTSQPFRSQSNAQKNKQQKKPSSSGTSSPVLRQNNQKQNSMVSRG
KSAPNKSVSSQQGRKMAGDSSTGKLKNASKISKGGSRKDIVESISCDKEGSSSNNKDFPQKKRLIERNSTNEKGMFVPEKSAARLQKQVQPNVVMDEHIK
WNNDSKDSTDVVSFTFTSPLVKPSAGPSRLSGKWDTRSNFNLDAINEKDDSDKKSEGLSSVGLNFVNGDALSLLLEKKLKELTSKIEPSINFTRGDTFVP
ANFSLEEPVVSSSSNWDMESGVFDCSPSEGKPSQYVDYCQSAQSSTKGQIFRGSKLQVEEPEECSSISNARKEQEHEDLSPLSVLEPTFLNESCWSSDCC
SGSSDVFTGSKGYSSSSEVKNMPKNFLSNPPSVDAEAKTTDSVSSSSIDASDTSASIDASDISDITQCSKKSRNSELEYIGDVLGNVNLTKGGLGSLFIS
QDDVSVMDPHLFNKLESMNLYTQGKKNLDRRGYRKLLFDCVSECLETRRLTYFRAGYAAWSKGMAAMSRGIETEVCNEIGGWRSMGEWVEDELVDKDMSS
GLGTWVDFRVEEFETGEELEREILSSLVDEVIGDVFVRRRDGRSVNL

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term mitochondrion
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES