LOC_Os03g19020

Expression Profile

RGAP LOCUS ID LOC_Os03g19020
RAP-DB ID Os03g0302200
Function PHD-finger family protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 4.272

3) NUCPRED Prediction
localization Nuclear
score 0.96

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 1
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category PHD

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHIRP1
Function assigned as per literature HIRP1 is an E3 ligase that acts as a positive regulator in the plant response to heat stress
Subcellular localization as per literature cytosol and nucleus
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 30730020
Reference of localization https://link.springer.com/article/10.1007%2Fs11103-019-00835-9
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 6
Number of PAT7 4
Number of Bipartite 3
Basic residues % 0.135
NLS score 4.39
Protein Sequence >LOC_Os03g19020.1 protein
MGKGGEGAVPVGESGGRRRRRPGEDGGDDDDEEYVVEEDEEEECDEDLSASSAGEGGEGTDEEYEEGDEDEEEDETPRPRQPVKSRENGRKGKADPPVAR
SRRRKYEDDDDYSEEEDDRVDEYGEDLEEEEEDLEEEEEEDDEAPRSKRMKKRGGRNVEGKLPLERSNRRRYEEDMDFDPDMDEEEEEEDVDFDPEVEDE
EEEDFEDEEDDELEATKVRVKNMGRRKSTLNQRRGKMKSSSKVASRKVGSVKARNAASIRRRQKKRSMLDRYEDDDFIVEDEVMADWQPRKKARIRKQME
VDPPTPVFEAEIWPTIDSDTTDFEFVTSDEEAAIAEPTRVIKKGRKKRVFVSDSSSDSEFVVSDKELGNLKESEPPESLKVLPSSPRKISVTGNGEHKGK
EKKEPQEAGRATCGICLSEEQRVTVQGVLDCCSHYFCFACIMQWSKVESRCPLCKRRFTTITKSSKEDTGLELTNSVIRVEERDQVYQPTEEEIRRWLDP
YENVVCIECNQGGDDSLMLLCDICDSSAHTYCVGLGREVPEGNWYCGGCRLDGEAHSYHNHVNGNSGMFGAISPIGTFERQGIDLNVSPREIPRGNHSVE
SQASTAGASTPSGRQTNATNFRRRQMHDWIRSLLSRPRTTLGPVMHHNGVHQSGFVPSTEPDHMNFCAPLESDTLHNTGSVPQSEPSQNFHVMSEANTSE
TSFGRHAALSERRQIYERFFMLLSRPSPTIRPDLCHNASEHGSSVPRVEPNHMNFHAPPVANSPQTLLDGIPNRSNGFSFTQAHSNFVDGNNFQGTEGV

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term binding
Presence of Splice variants YES