| RGAP LOCUS ID |
LOC_Os03g18810 |
| RAP-DB ID |
Os03g0299900 |
| Function |
aminotransferase, classes I and II, domain containing protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
14 |
2) CELLO
Prediction
|
| localization |
Chloroplast |
| score |
2.919 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.05 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
9 |
| confidence value |
0.88 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsAGD2 |
| Function assigned as per literature |
AGD2 synthesizes an important amino acid-derived molecule that promotes development and suppresses defenses, |
| Subcellular localization as per literature |
Chloroplasts |
| Cells used for localization experiment |
protoplasts isolated from A. thaliana |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
14729919 |
| Reference of localization |
http://www.plantcell.org/content/16/2/353.long |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
1 |
| Number of Bipartite |
0 |
| Basic residues % |
0.108 |
| NLS score |
-0.22 |
| Protein Sequence |
>LOC_Os03g18810.1 protein
MAASPAAGAAAATVSSFVSPSSFSSVKASKPDRLRPARRAAAVNVRCVSSPPATETSFKTKVPRNANMAKLQAGYLFPEIARRRAAHLLKFPDAKIISLG
IGDTTEPIPDVITNAMAKRAHALSTVDGYSGYGAEQGEKKLRAAIAATYYADLGIEETDIFVSDGAKCDISRLQVLFGSNVKIAVQDPSYPAYVDSSVIM
GQTGLYQEDVQKYGNIEYMKCSPENGFFPDLSSVPRTDIIFFCSPNNPTGAAASRDQLTKLVKFAKDNGSIIVYDSAYAMYISDDSPKSIFEIPGAKEVA
IETASFSKYAGFTGVRLGWTVVPKELLFSDGHPVAKDFNRIVCTCFNGASNISQAGGLGCLSPEGLKAMSDVVGFYKENTKIIVDTFTSLGFNVYGAKNA
PYVWVHFPGRNSWDVFAEILEKAHVVTTPGSGFGPGGEGFVRVSAFGHRENIIEAARRLKQLYK |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
response to biotic stimulus |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 7 |
| GO Category |
Molecular Function |
| GO Term |
binding |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
transferase activity |
|
| 9 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| Presence of Splice variants |
No |
