LOC_Os03g18550

Expression Profile

RGAP LOCUS ID LOC_Os03g18550
RAP-DB ID Os03g0296800
Function mitochondrial carrier protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 8

2) CELLO Prediction
localization PlasmaMembrane
score 1.224

3) NUCPRED Prediction
localization Non Nuclear
score 0.08

4) Y-Loc Prediction
localization Cytoplasm
score 71
confidence value 0.33
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) MIT
Function assigned as per literature MIT is a mitochondrial Fe transporter essential for rice growth and development
Subcellular localization as per literature Mitochondria
Cells used for localization experiment Tobacco BY-2 cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 21610725
Reference of localization https://www.nature.com/articles/ncomms1326
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.101
NLS score -0.16
Protein Sequence >LOC_Os03g18550.1 protein
MAADYRTPDRLLSAAAPGEEQAQDPPKPVLAVAATHDGLRFWQYMLAGSVAGVVEHTAMFPVDTLKTHMQAGAPPCRPVLSLGAVLRAAVSGEGGVRALY
RGLPAMALGAGPAHAVYFSVYEFAKSRLSERLGPNNPAAHAASGVLATIASDAVFTPMDTVKQRLQLTSSPYTGVSHCVRTVLRDEGLGAFFASYRTTVV
MNAPYTAVHFATYEAAKRMLGDMATNEDSLAVHATAGAAAGALAAAVTTPLDVVKTQLQCQGVCGCERFSSSSIGDVFRTIIKRDGYAGLMRGWKPRMLF
HAPAAAICWSTYEASKSFFERFNEKRRK

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Cellular comBiological Processonent
GO Term membrane
3
GO Category Biological Process
GO Term cellular process
4
GO Category Cellular comBiological Processonent
GO Term mitochondrion
5
GO Category Molecular Function
GO Term binding
Presence of Splice variants YES