LOC_Os03g18360

Expression Profile

RGAP LOCUS ID LOC_Os03g18360
RAP-DB ID Os03g0294700
Function BTBT1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 11

2) CELLO Prediction
localization Nuclear
score 1.418

3) NUCPRED Prediction
localization Non Nuclear
score 0.47

4) Y-Loc Prediction
localization Chloroplast
score 6
confidence value 0.11
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsETOL1
Function assigned as per literature OsETOL1 differentially modulates drought and submergence tolerancein rice
Subcellular localization as per literature Cytosol
Cells used for localization experiment Arabidopsis leaf protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 24641694
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/tpj.12508
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 1
Basic residues % 0.111
NLS score 0.28
Protein Sequence >LOC_Os03g18360.1 protein
MTNNFLTTIRSLKLIEGCKAAQIYAFSSAGGASTSGSGDGAGKPLPPPQPRSLSVRSASVCYPHAPSTSGAFVADSPLPCGLPVAAALEPALDACLRPVD
HVKALAASFRRMSSAEAEGDDLCDVFLEQHALFHALGDARLLRRALRAARVHATDPHRRVVLAAWLRYERREDEFDPMPPPLAPCTPTTPLLECPRAAVF
AGESPGVDPICPCRRPPPPPPTPPSSRFRRNTSSIDQMVEDDGDVETNDLWFVIGEEEVACERSCIAALSKPLNTLLYGGFAEAQRDRIDFTRDGITPCG
MRAVSAYSRHGRLDDFSTDTILELLAFSNKFCCEGLKSACDNKLATMVSGVEDALSLVDLGLEEAAHLLVAACLQAFLRELPKSLSNPDVARLLCSPDGR
ERLDIAGNASFALYYFLSSVAMEEDIRSNTTVMLLERLCESAERPWQKQLALHQFGCVMLERGEFKDAQGWFEDAIAEGHTYSLAGVARSKFKRGHKYSA
YKMMNSIMEDYEPAGWMYQERSLYCVGKEKMADLHIATELDPTLTFPYKYRAVVFLEEDMVESAVAEISKVLGFKLVTDCLELRAWFYLALEEYEAAVRD
IRAILTLDPSYMMFHGKVHGEQLIEILRGYVQQWDMADCWMQLYDRWSEVDDIGSLAVVQQMLTREPGNSSLRFRQSLLLLRLNCQKAAMRSLRFARNCS
AHEHERLVYEGWILYDTGHRDEALAKAEQSIKIQRSFEAFFLKAYALGDSSLDTESSLSVVQLLEHANSCASDNLRKGQAYNNMGSIYVDCDLLDEAAEC
YNIALNIKHTRAHQGLARVHYLKNRKKAAYGEMSELIKVAKDSASAYEKRSEYGERDEARSDLNMATLLDPTRTYPYRYRAAVLMDESKEDEAIGELSQA
IAFRADLQLLHLRAAFFDSMGDNANTLRDCEAALCLDPTHGDTLELYRKASTKAEPQS

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Biological Process
GO Term post-embryonic development
4
GO Category Biological Process
GO Term protein metabolic process
5
GO Category Biological Process
GO Term catabolic process
6
GO Category Molecular Function
GO Term protein binding
7
GO Category Biological Process
GO Term signal transduction
Presence of Splice variants No