LOC_Os03g18070

Expression Profile

RGAP LOCUS ID LOC_Os03g18070
RAP-DB ID Os03g0290300
Function omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 5

2) CELLO Prediction
localization Chloroplast
score 2.307

3) NUCPRED Prediction
localization Non Nuclear
score 0.01

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.95
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsFAD7
Function assigned as per literature OsFAD7 is responsible forhyperfortifying a-linolenic acid in transgenic rice seed
Subcellular localization as per literature Chloroplasts
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 22378946
Reference of localization https://academic.oup.com/jxb/article/63/8/3279/733629
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.094
NLS score -0.47
Protein Sequence >LOC_Os03g18070.1 protein
MARLVLSECCGLTPLRLRGRGAIALPAPPSLAAGPRRPVSAAAAGGAIHREWALRVSAPTRLTSVVEEDNRGEEVVEEEARGSLAAAEAAAGEVGGDGDG
FDPGAPPPFGLAEIRAAIPKHCWVKDPWRSMSYVLRDVVVVLGLAAAAARVDSWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSSNAKLNSVVGHILHSS
ILVPYHGWRISHRTHHQNHGHVEKDESWQPLSERLYNSLDYMTKKLRFTMPFPMLAFPLYLFARSPGKKGSHFNPSSDLFQPNEKKDVITSTASWLAMVG
ILAGLTFVMGPLKMLKLYAVPYVIFVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNVHHDIGTHVIHHLFPQIPHYHLVEATEAA
KPVLGKYYKEPEKSAPLPFHLLGVLAKSLNSDHYVSDTGDVVYYQTDLKTSSSAQSSD

GO Analysis
1
GO Category Molecular Function
GO Term catalytic activity
2
GO Category Cellular comBiological Processonent
GO Term plastid
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term cellular process
5
GO Category Biological Process
GO Term lipid metabolic process
6
GO Category Biological Process
GO Term metabolic process
7
GO Category Biological Process
GO Term response to abiotic stimulus
Presence of Splice variants No