| RGAP LOCUS ID |
LOC_Os03g17610 |
| RAP-DB ID |
Os03g0284800 |
| Function |
OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
10 |
2) CELLO
Prediction
|
| localization |
Chloroplast |
| score |
3.692 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.37 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
83.81 |
| confidence value |
0.26 |
| Number Of Software Predicting Nucleus |
1 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsTOP6A3 |
| Function assigned as per literature |
TOP6 genes play a crucial role in stress adaptation of plants by altering gene expression |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
Onion epidermis cells |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
17116242 |
| Reference of localization |
https://febs.onlinelibrary.wiley.com/doi/epdf/10.1111/j.1742-4658.2006.05518.x |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
2 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.143 |
| NLS score |
0.09 |
| Protein Sequence |
>LOC_Os03g17610.1 protein
MSEKKRRGGAGAGAASGSASKKPRVSTAASYAESLRSKLRPDASILATLRSLASACSKSKPAGSSSSSSSASKALAAEDDPAASYIVVADQDSASVTSRI
NRLVLAAARSILSGRGFSFAVPSRAASNQVYLPDLDRIVLVRRESARPFANVATARKATITARVLSLVHAVLRRGIHVTKRDLFYTDVKLFGDQAQSDAV
LDDVSCMLGCTRSSLHVVASEKGVVVGRLTFADDGDRIDCTRMGVGGKAIPPNIDRVSGIESDALFILLVEKDAAFMRLAEDRFYNRFPCIILTAKGQPD
VATRLFLRRLKVELKLPVLALVDSDPYGLKILSVYMCGSKNMSYDSANLTTPDIKWLGVRPSDLDKYRVPEQCRLPMTDHDIKVGKELLEEDFVKQNEGW
VKELETMLRTRQKAEIQALSSFGFQYLTEVYLPLKLQQQDWI |
GO Analysis |
| 1 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 4 |
| GO Category |
Molecular Function |
| GO Term |
nucleotide binding |
|
| 5 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
hydrolase activity |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
DNA metabolic process |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
catabolic process |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 10 |
| GO Category |
Biological Process |
| GO Term |
cell differentiation |
|
| 11 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| Presence of Splice variants |
No |
