LOC_Os03g17570

Expression Profile

RGAP LOCUS ID LOC_Os03g17570
RAP-DB ID Os03g0284100
Function response regulator receiver domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 4.45

3) NUCPRED Prediction
localization Nuclear
score 0.84

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 1
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category Pseudo ARR-B

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCCT11
Function assigned as per literature Regulation of flowering time
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplast cells 
NUCLEAR or Not Nuclear NUCLEAR
PMID 25563494
Reference of localization https://www.nature.com/articles/srep07663
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 1
Basic residues % 0.117
NLS score 0.21
Protein Sequence >LOC_Os03g17570.3 protein
MGSACEAGTDEPSRDDVKGTGNGILENGHSHKPEEEEWRNGMGEDLPNGHSTPPEPQQTDEQKEHQVQIVRWERFLPVKTLRVLLVENDDSTRQVVSALL
RKCCYEVIPAENGLHAWQCLEDLQNHIDLVLTEVVMPRLSGIGLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVW
RRCHSSSGSGSESGIRTQKCTKPKVDDEYENNSGSNNDNEDDDDNDEDDDDLSVGHNARDGSDNGSGTQSSWTKRAVEIDSPQQMSPDQPSDLPDSTCAQ
VIHPTSEICSNRWLPTANKRSGKKHKENNDDSMGKYLEIGAPRNSSMEYQSSPREMSVNPTEKQHETLMPQSKTTRETDSRNTQNEPTTQTVDLISSIAR
STDDKQVVRINNAPDCSSKVPDGNDKNRDSLIDMTSEELGLKRLKTTGSATEIHDERNILKRSDLSAFTRYHTTVASNQGGAGFGGSCSPQDNSSEALKT
DSNCKVKSNSDAAEIKQGSNGSSNNNDMGSSTKNAITKPSSNRGKVISPSAVKATQHTSAFHPVQRQTSPANVVGKDKVDEGIANGVNVGHPVDVQNSFM
QHHHHVHYYVHVMTQQQQQPSIERGSSDAQCGSSNVFDPPIEGHAANYSVNGSFSGGHNGNNGQRGPSTAPNVGRPNMETVNGIVDENGAGGGNGSGSGS
GNDLYQNGVCYREAALNKFRQKRKVRNFGKKVRYQSRKRLAEQRPRIRGQFVRQSGQEDQAGQDEDR

GO Analysis
1
GO Category Biological Process
GO Term signal transduction
2
GO Category Biological Process
GO Term response to abiotic stimulus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Biological Process
GO Term biological_process
6
GO Category Molecular Function
GO Term DNA binding
7
GO Category Cellular comBiological Processonent
GO Term nucleus
8
GO Category Cellular comBiological Processonent
GO Term mitochondrion
9
GO Category Molecular Function
GO Term signal transducer activity
Presence of Splice variants YES