LOC_Os03g17350

Expression Profile

RGAP LOCUS ID LOC_Os03g17350
RAP-DB ID Os03g0281900
Function white-brown complex homolog protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 8

2) CELLO Prediction
localization PlasmaMembrane
score 4.732

3) NUCPRED Prediction
localization Non Nuclear
score 0.46

4) Y-Loc Prediction
localization Nuclear
score 85.79
confidence value 0.61
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) Rcn1|OsABCG5
Function assigned as per literature RCN1/OsABCG5 has a role in the suberization of the hypodermis of rice roots, which contributes to formation of the apoplastic barrier
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Root cross-sections of trans-genic rice plants
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 25041515
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/tpj.12614
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.105
NLS score 0.18
Protein Sequence >LOC_Os03g17350.1 protein
MSRFVDKLPLFDRRPSPMEEAEGLPRSGYLGQLHHHQYYQPHSNMLPLEQSPPTSTKHTSVTLAQLLKRVNDARSGSSTPISSPRYTIELGGSKPESVSS
ESDDHHSDDGGSEGQPRALVLKFTDLTYSVKQRRKGSCLPFRRAAADEPELPAMRTLLDGISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLHGS
VTINGESIDSNLLKVISAYVRQEDLLYPMLTVEETLMFAAEFRLPRSLPTREKKKRVKELIDQLGLKRAANTIIGDEGHRGVSGGERRRVSIGVDIIHNP
IMLFLDEPTSGLDSTSAFMVVTVLKAIAQSGSVVVMSIHQPSYRILGLLDRLLFLSRGKTVYYGPPSELPPFFLDFGKPIPDNENPTEFALDLIKEMETE
TEGTKRLAEHNAAWQLKHHGEGRGYGGKPGMSLKEAISASISRGKLVSGATDGTVSVAASDHSAPPPSSSSVSKFVNPFWIEMGVLTRRAFINTKRTPEV
FIIRLAAVLVTGFILATIFWRLDESPKGVQERLGFFAIAMSTMYYTCSDALPVFLSERYIFLRETAYNAYRRSSYVLSHTIVGFPSLVVLSFAFALTTFF
SVGLAGGVNGFFYFVAIVLASFWAGSGFATFLSGVVTHVMLGFPVVLSTLAYFLLFSGFFINRDRIPRYWLWFHYISLVKYPYEAVMQNEFGDPTRCFVR
GVQMFDNTPLAALPAAVKVRVLQSMSASLGVNIGTGTCITTGPDFLKQQAITDFGKWECLWITVAWGFLFRILFYISLLLGSRNKRR

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Cellular comBiological Processonent
GO Term membrane
3
GO Category Biological Process
GO Term cellular process
4
GO Category Molecular Function
GO Term hydrolase activity
5
GO Category Molecular Function
GO Term transporter activity
6
GO Category Biological Process
GO Term catabolic process
7
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
Presence of Splice variants No