| RGAP LOCUS ID |
LOC_Os03g16570 |
| RAP-DB ID |
Os03g0272300 |
| Function |
zinc finger, C3HC4 type domain containing protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
plas |
| score |
4.5 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
1.266 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.19 |
4) Y-Loc
Prediction
|
| localization |
Mitochondrion |
| score |
|
| confidence value |
0.42 |
| Number Of Software Predicting Nucleus |
1 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsSDIR1 |
| Function assigned as per literature |
OsSDIR1 is involved in drought tolerance in transgenic rice |
| Subcellular localization as per literature |
Intracellular membrane |
| Cells used for localization experiment |
Onion epidermal cells |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
21499841 |
| Reference of localization |
https://link.springer.com/article/10.1007%2Fs11103-011-9775-z |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.089 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os03g16570.2 protein
MSFVFRGSRGDIEAGGFPGFAPERRAMRIHAGGRPVNSNLAFLVTVLMLFMVLNSHQMSPNFLVWLVLGVFLMATSLRMYATCQQLQAQAQAHAAAANGF
LGHTELRVHVPPTIALATRGRLQSLRLQLALLDREFDDLDYDALRALDADNSPHAPSMSEEEINALPVFKYKVQAHQGSASFRKSDGPSQPSVSSTESGN
EKKQDRFKADATDNTLEDELTCSVCLEQVVVGDLLRSLPCLHQFHANCIDPWLRQQGTCPVCKHRVSDGWHGEADASNMV |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
intracellular |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cell |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
protein modification process |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
binding |
|
| Presence of Splice variants |
YES |
