| RGAP LOCUS ID |
LOC_Os03g16140 |
| RAP-DB ID |
Os03g0268300 |
| Function |
digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
pero |
| score |
7 |
2) CELLO
Prediction
|
| localization |
Cytoplasmic |
| score |
2.258 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.07 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
8 |
| confidence value |
0.4 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsDGD2β |
| Function assigned as per literature |
OsDGD2β plays a role in pollen development |
| Subcellular localization as per literature |
Chloroplast |
| Cells used for localization experiment |
Rice protoplasts |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
31414258 |
| Reference of localization |
https://thericejournal.springeropen.com/articles/10.1186/s12284-019-0320-z |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.127 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os03g16140.1 protein
MARKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKAGDWEVTLVVPWLSKGDQLLVYPNKMKFSVPGEQEGYVRRWLEERIGLLPKFEIKFYPGKFSTEKR
SILPAGDITQTVSDDKADIAVLEEPEHLTWYHHGRRWKNKFRKVIGVVHTNYLEYVKRERNGYIHAFLLKHINSWVTDIYCHKVIRLSAATQEVPRSIVC
NVHGVNPKFIEIGKLKHQQISQREQAFFKGAYYIGKMVWSKGYTELLQLLQKHQKELSGLKMELYGSGEDSDEVKASAEKLNLDVRVYPGRDHGDSIFHD
YKVFINPSTTDVVCTTTAEALAMGKIVICANHPSNEFFKRFPNCHMYNTEKEFVRLTMKALAEEPIPLSEELRHELSWEAATERFVRVADIAPIMSIKQH
SPSPQYFMYISPDELKKNMEEASAFFHNAISGFETARCVFGAIPNTLQPDEQQCKELGWRLQE |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
response to extracellular stimulus |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
cell communication |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
lipid metabolic process |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
transferase activity |
|
| 9 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 10 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| Presence of Splice variants |
YES |
