LOC_Os03g16030

Expression Profile

RGAP LOCUS ID LOC_Os03g16030
RAP-DB ID Os03g0267000
Function hsp20/alpha crystallin family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 14

2) CELLO Prediction
localization Cytoplasmic
score 3.777

3) NUCPRED Prediction
localization Non Nuclear
score 0.05

4) Y-Loc Prediction
localization Chloroplast
score 5
confidence value 0.1
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHsp18.0-CI|Oshsp18.0|OsMSR3
Function assigned as per literature OsHsp18.0 is a positive regulator in both biotic and abiotic defense responses
Subcellular localization as per literature Cytoplasm and nuclear envelope
Cells used for localization experiment Nicotiana benthamiana leaf cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 28900229
Reference of localization https://www.nature.com/articles/s41598-017-11882-x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.161
NLS score -0.47
Protein Sequence >LOC_Os03g16030.1 protein
MSLIRRSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQE
EKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVTG

GO Analysis
1
GO Category Biological Process
GO Term response to abiotic stimulus
2
GO Category Biological Process
GO Term response to stress
Presence of Splice variants No