| RGAP LOCUS ID |
LOC_Os03g15840 |
| RAP-DB ID |
Os03g0265100 |
| Function |
glycosyl transferase, group 1 domain containing protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
cysk |
| score |
8 |
2) CELLO
Prediction
|
| localization |
Cytoplasmic |
| score |
1.457 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.08 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
85 |
| confidence value |
0.43 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
PLS2 |
| Function assigned as per literature |
PLS2 allele is essential for normal leaf senescence and its mutation resulted in PLS |
| Subcellular localization as per literature |
Endoplasmic reticulum |
| Cells used for localization experiment |
tobacco (Nicotiana benthamiana) epidermal cells |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
29755498 |
| Reference of localization |
https://www.frontiersin.org/articles/10.3389/fpls.2018.00560/full |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
1 |
| Number of Bipartite |
0 |
| Basic residues % |
0.128 |
| NLS score |
-0.04 |
| Protein Sequence |
>LOC_Os03g15840.1 protein
MGQQAAEAQPLLLQGDQVDAEWGCRPHRIVLFVEPSPFAYISGYKNRFQNFIKHLREMGDEMLVVTTHKGAPEEFHGAKVIGSWSFPCPLYQNVPLSLAL
SPRIFSAVAKFKPDIIHATSPGVMVFGARFIAKMLSVPMVMSYHTHLPAYIPRYNLNWLLGPTWSLIRCLHRSADLTLVPSVAIAEDFETAKVVSANRVR
LWNKGVDSESFHPKFRKHEMRIKLSGGEPEKPLIIHVGRFGREKNLDFLKRVMERLPGVRIAFVGDGPYRAELERMFTGMPAVFTGMLQGEELSQAYASG
DLFAMPSESETLGQVVLESMASGVPVVAARAGGIPDIIPKDKEGKTSFLFTPGDLDECVRKIEQLLSSKVLRESIGRAAREEMEKCDWRAASKTIRNEHY
CTATLYWRKKMGRTN |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
response to extracellular stimulus |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
cell communication |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
lipid metabolic process |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
transferase activity |
|
| 9 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| Presence of Splice variants |
No |
