| RGAP LOCUS ID |
LOC_Os03g15650 |
| RAP-DB ID |
Os03g0262900 |
| Function |
vacuolar sorting protein, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
cyto |
| score |
6 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
2.771 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.49 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
71 |
| confidence value |
0.94 |
| Number Of Software Predicting Nucleus |
1 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
GLUP6|GEF |
| Function assigned as per literature |
VPS9a is involved in regulating DV-mediated post-Golgi traffic in rice |
| Subcellular localization as per literature |
Cytosol but localized in trans-Golgi network (TGN) and protein storage vacuole (PSV) when interacts with GPA3 |
| Cells used for localization experiment |
Nicotiana benthamiana leaf epidermal cells |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
24488962 |
| Reference of localization |
http://www.plantcell.org/content/26/1/410 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.104 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os03g15650.1 protein
MDGGGGGDAFGSATAPLAWHDFLERMRQPSAADFVKSIKGFIVTFSNRAPDPEHDSAAVQEFLENMEGAFRAHTPWAGSSEEELESAGEGLEKYVMTKLF
NRVFASVPEDVKSDEELFEKMSLLQQFIRPENLDIKPEYQSETSWLLAQKELQKINMYKAPRDKLACILNCCKVINNLLLNASIVSNENPPGADEFLPVL
IYVTIKANPPQLHSNLLYIQRYRRQSRLVSEAQYFFTNILSAESFIWNIDGESLSMDERDFQKKMDLARERMLGLSASSENQDNQNNLDVREQKSQTLKA
SRDSDVNLSLKDNFQGPGLEMRRDSDASSNPVERVQSISDLEKKGAAELLKDDDLNKKIQEYPFLFARSGDLTVADVENLLNSYKQLVLKYVALSQGMGI
NLENPPVQSMQTVSDLVESEEPKNVKNAVNFSEGSSKTSDDIKNDTLYSEVDNTGTQQTAVDPSYQKAQQDEASDQPEHA |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
transport |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
cellular component organization |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
cell cycle |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 10 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytosol |
|
| 11 |
| GO Category |
Biological Process |
| GO Term |
embryo development |
|
| 12 |
| GO Category |
Molecular Function |
| GO Term |
enzyme regulator activity |
|
| Presence of Splice variants |
YES |
