LOC_Os03g14980

Expression Profile

RGAP LOCUS ID LOC_Os03g14980
RAP-DB ID Os03g0254700
Function lissencephaly type-1-like homology motif, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 5

2) CELLO Prediction
localization Nuclear
score 1.27

3) NUCPRED Prediction
localization Non Nuclear
score 0.63

4) Y-Loc Prediction
localization Nuclear
score 99.81
confidence value 0.89
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) ASPR2|OsTPR2
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.101
NLS score -0.47
Protein Sequence >LOC_Os03g14980.1 protein
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFYFNMKYFEDEVINGNWDEVERYLGGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKD
LKVFASFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFV
DHSCGQPNGARAPSPANNPLLGSIPKPGGFPPLGAHAPFQPAPTPVPPLAGWMSNPPAVTHPAVSGGAIGFGTPTNPAAILKHPRTPTTANPSMDYPSGD
SDHVSKRTRPVGMSEEVNLPVNMLPVTYPQSHSYPQDDFHKNVARTLSQGSTPMSMDFHPVQQTLLLVGTNVGDIGLWDVGTKERLVLRNFKVWDLTKCS
MALQASLVKDPTVSVNRIIWSPDGTLFGVAYSRHIVQIYSYHGGDDIRQHLEIDAHVGGVNDIAFAHPNKQLCIITCGDDKTIKVWEATSGAKQFTFEGH
EAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGHWCTTMAYSADGSRLFSCGTSKDGESHLVEWNESEGAVKRTYQGFRKRSMGVVQF
DTTRNRFLAAGDEFLIKIWDMDNTSLLTTIDADGGLPASPRVRFNKEGTLLAVSTHENGIKILANADGVRLLRTLENRSFDASRSASETVTKPLMNPLTA
AAAAAASAAAAGTSSGNAAPPAITALNGDSRSLVDVKPRIADEPLDKSKVWKLMEITESSQCRSLKLTDNMRTSKISRLIYTNSGVAILALASNAVHLLW
KWPRNDRNSSGKATASVSPQLWQPPSGILMTNDITDNPEEAVHCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGM
DDSTIQIYNVRIDEVKSKLRGHSKKITGLAFSNVLNVLVSSGADAQICVWSTDGWDKLKSRMLQIPSSRPSSIILDTRVQFHQDQLHFLVVHETQIAIYE
TTKLEPVKQWPVRENSSPITHAMFSCDSQLIYASFLDATVCIFNASSLRLQCRILPASYLPQNISSNVYPVVVAAHPSEANQFALGLTDGGVYVLEPLES
ERKWGNPPPAENGSTSALSTPPNGASSSDQPER

GO Analysis
1
GO Category Biological Process
GO Term multicellular organismal development
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Biological Process
GO Term response to endogenous stimulus
5
GO Category Cellular comBiological Processonent
GO Term nucleus
6
GO Category Molecular Function
GO Term protein binding
7
GO Category Biological Process
GO Term reproduction
8
GO Category Biological Process
GO Term anatomical structure morphogenesis
9
GO Category Biological Process
GO Term post-embryonic development
10
GO Category Biological Process
GO Term embryo development
11
GO Category Biological Process
GO Term signal transduction
12
GO Category Cellular comBiological Processonent
GO Term cytosol
Presence of Splice variants YES