LOC_Os03g13850

Expression Profile

RGAP LOCUS ID LOC_Os03g13850
RAP-DB ID Os03g0242100
Function cell cycle checkpoint protein RAD17, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 9

2) CELLO Prediction
localization Nuclear
score 2.262

3) NUCPRED Prediction
localization Non Nuclear
score 0.3

4) Y-Loc Prediction
localization Cytoplasm
score 41
confidence value 0.12
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRAD17
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.109
NLS score -0.29
Protein Sequence >LOC_Os03g13850.1 protein
MTWACQAGSICQTEELWVDKYKPHSLAELSVHKKKVEDVKKWLDEKLRAPKGTFGGWTLVLTGQAGVGKSATIKAIAAELGVEICEWTAPVPTLWTEHLH
ANSGLGYISKLEEFENFVEKIRKYSLLSPTNFGSQRKHTIILIDDIPVTSGKVSFARLGKCLTGLIQSTQVPTVISLTQYHKSENNDTAMWNSEDLESLL
QSAGAHKISFNPVTVNSIKKILVRICKQEGSDLTDDLVHQIATSSGGDIRHAIMSLQYYCLNPRRLNSALARTAILPGLKSGGSLVPGQDSYGCSSVIPT
ACGRDETLTLFHALGKFLHNKRETYSEVDVAVDVDSFPMKEKLRRNPLKMDIPEKVLSQAHGKVRTVADFLHENVLDFIDNDAIDDAWSVASYLSEADCL
LAGSPISSTRWMVNESYEAENMTQLIAASVAARGILFGNAHVSSSRWHTIRSPRVWQIEQSFRSRKDLILRERYDCSSTSGSRNFSDVVTEFKPFERWIS
PHNDMPRSNSFNHNIEASSSEEDEDEIEDW

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term response to stress
3
GO Category Biological Process
GO Term DNA metabolic process
4
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No