LOC_Os03g13590

Expression Profile

RGAP LOCUS ID LOC_Os03g13590
RAP-DB ID Os03g0239200
Function potyvirus VPg interacting protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12

2) CELLO Prediction
localization Nuclear
score 3.4

3) NUCPRED Prediction
localization Nuclear
score 0.8

4) Y-Loc Prediction
localization Nuclear
score 84.03
confidence value 0.62
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsTITANIA
Function assigned as per literature OsTTA is a constitutively expressed regulator of multiple metal transporter genes responsible for essential metals delivery to shoots for their normal growth.
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 30194869
Reference of localization https://onlinelibrary.wiley.com/doi/pdf/10.1111/tpj.14085
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.12
NLS score 0.4
Protein Sequence >LOC_Os03g13590.1 protein
MFGDSDGSKDANPGAPPSTTDPPFPNRELTLSSYLCEKPTLASAAAGGGGGAGPSSPPNPAAAAAGDDGKHCVERDFLHLSAPKRGDPPGDDSSVVGGKK
PRLDSLQLSLSLNSDGPAAPPSSQPPLASLLQPVPATDGDLRGAAAAAAVPAAPARRTYSATTARTRSINSDDMSYSYSIFSHNPSCSLTHNSTDIYAAG
EGTNGSVHSRFNFRPMGDGSVAFATPPLKEGTSSFFPTELPARMAAAAAAAAASAGGSFDGGRGGLHASRPDKILRDIVSDSVTAMAQVLQDFPSERLEL
LREAVRGMIDSHEKRDELASLQRKLERRSDLTTETLGRANRTQLEILVAIKTGIATFVTGKGRVPSSELVEMFLMTRCRNLNCKSTLPVDDCDCKICSTK
KGFCSACTCSVCHKFDCAANTCTWVGCDVCGHWCHVACALERNLIRPGPTLKGPIGTTEMQFQCLACNHSSEMFGFVKEVFNCCAENWNAETLMKELDFV
RKIFAGCEDFEGKGLHAKAEEVLSLLGKKIISPLDATNSILQFFKYGVTDYSVTGSTSKGILAAQASQSTDMRSLQTPTITPPKSSFNFKTTTSILDTDA
LKPSPKPLSIEPHFSTASKEDDSSLETIVKCKEAEAKLFQKLADDARKEVDSYRQIVRSRTQKLEEEYAAKLAKVCFQETEEKRRKKLEELKMLENSHYD
YLKMKMRMQTDIQGLLERMEATKKMWV

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Molecular Function
GO Term protein binding
Presence of Splice variants No