LOC_Os03g13370

Expression Profile

RGAP LOCUS ID LOC_Os03g13370
RAP-DB ID Os03g0236900
Function tetratricopeptide repeat domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 4

2) CELLO Prediction
localization Cytoplasmic
score 1.049

3) NUCPRED Prediction
localization Non Nuclear
score 0.29

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.05
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsAPC6
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.102
NLS score 0.52
Protein Sequence >LOC_Os03g13370.1 protein
MPLSAASINRASYQVLLLLAAAAVSTTGGDGNTAPGNATATATTGGDDTEMYICYLCTGRNPILIRRCPIYWDYCHLNCFDDAPSTAAAADDVAAVPVAS
PAAPARRVGGVPRETLEDEECYVMKLYENGSYVIVTTLGCSQTASCLLSCGGGDLAADGEEALAAAHPAGAVGVSPPWRMWDTKFGFPPAAPPTTAAAAQ
KNPKRRREAEAEGEVAAEMREEAVERLRGVVRDSVGKHLYASAIFLADKVAAATGDPADVYMLAQALFLGRHFRRALHILNSSKLLRDLRFRFLAAKCLE
ELKEWHQCLIILGDAKIDEHGNVVDQDDGSDIYFDKDAEDHEINIKAAICFLRGKAYEALDNCDLARQWYKAAVKADPLCYEALECLVDNYMLTCEEESE
LLSSLKFGKEDGWLSAFYSCLIRKHEKEYIVEAKFKEFERESCSISSLSSGLTLKNNIDVLACKAEYYHQSGEYQKCFELTSALLERDPFHLKCTLVHLA
AAMELGHSNDLYILACNLVKDYPQKALSWFAVGCYYYCIKKYDQARRYFGKATGLDGTFPPAWIGTGIAYAAQEEGDQAMAAFRTAARLFPGCHLPTLYM
GMQYLRMHNFKLAEQFFTQAKSICPSDPLIYNEMGVVAYNMKEYQKAVQWFELTLEHTSSSLNEMWEPTLVNLGHALRKLKKYQKAISYYEKALTFQTKS
LSAFAGLAYTYHLMDKFEAAITYYHKALWLKPDDQFSTDMLTLALESSCQITARTR

GO Analysis
1
GO Category Biological Process
GO Term DNA metabolic process
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term cell cycle
4
GO Category Cellular comBiological Processonent
GO Term cellular_component
5
GO Category Molecular Function
GO Term binding
6
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No