LOC_Os03g13010

Expression Profile

RGAP LOCUS ID LOC_Os03g13010
RAP-DB ID Os03g0232600
Function U-box domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 11

2) CELLO Prediction
localization Cytoplasmic
score 1.977

3) NUCPRED Prediction
localization Non Nuclear
score 0.18

4) Y-Loc Prediction
localization Cytoplasm
score 74
confidence value 0.51
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) TUD1|DSG1|ELF1
Function assigned as per literature TUD1 mediate a BR-signaling pathway
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 23526892
Reference of localization https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1003391
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.107
NLS score -0.47
Protein Sequence >LOC_Os03g13010.1 protein
MPQYQELPCGGQVLDIDTALKDGILGGGPELGDAAAGDGGKQPVELRKMMDELDAAGDGGGDEAVPAVFICPISLEPMVDPVTLCTGQTYESANISRWLA
LGHRTCPTTMQELWDVTPIPNTTLRQLIAAWFSRRYTRFKKRSADFHGRAAELVHALRGTAVPKRQPLKGQARVAALRELRSLAAAHQSVTKAIAEAGGV
GLLTSLLGPFTSHAVGSEAVAILVSGVPLDADAKAALMQPAKVSLLVDMLNEGAVDTKINCVRLIRILMEEKGFRPDTVASLSLLVGVMRLVRDKRHPDG
VAAGLELLNSICAVHKPARSLIVSIGAVPQLVELLPELPTECVEPALDILDALAAVPEGRIALKDCPRTITNAVRLLMRVSEACTRRALSMLWVVCRMAP
EECAPAALDAGLGAKLLLVIQSGCGPELKQQASELLKLCTMNCTSTVFISKCKLTKTIQ

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term intracellular
2
GO Category Biological Process
GO Term protein modification process
3
GO Category Molecular Function
GO Term binding
4
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants No