LOC_Os03g12820

Expression Profile

RGAP LOCUS ID LOC_Os03g12820
RAP-DB ID Os03g0230300
Function ATP8, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 7

2) CELLO Prediction
localization Nuclear
score 1.021

3) NUCPRED Prediction
localization Non Nuclear
score 0.4

4) Y-Loc Prediction
localization Nuclear
score 99.99
confidence value 0.95
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSRO1c
Function assigned as per literature OsSRO1c has dual roles in drought and oxidative stress tolerance of rice by promoting stomatal closure and H2O2 accumulation through a novel pathway involving regulators SNAC1 and DST
Subcellular localization as per literature OsSRO1c was colocalized with GHD7 in nucleus
Cells used for localization experiment
NUCLEAR or Not Nuclear NUCLEAR
PMID 23202132
Reference of localization https://academic.oup.com/jxb/article/64/2/569/531959
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.145
NLS score 1.16
Protein Sequence >LOC_Os03g12820.1 protein
MDFSGDVKPAIHRPSVAAARGGGNGGAIPLLRGWQAFRRSGAPARLLCFEGGAWADVAGEVVGLLRRAFMEGKAVCEAACGGRVFLFDFMRMVRIDEATA
EEAALGWIDDRGACFFPAPEGGRKRKRERDEAGSEVKGEDRRRRQPAAEEEDGDEASSGVEERSGESRPEADEPDRKKARGTLWGKAVRLDEADKFYKVV
EKLFVSRMAPVAAARGVAITAVHKVAQGPRARAFHLQGQLLAAARGVGDGSNAKFAWYGAPAADVAAAVEHGFGRTNGQFLGGRAHGDGVHLSPPQYPHA
SAMLTKPDENGEAHIVLCRVLMGRPEAVPASSPQFHPSSDEYDSAVDNLENPRWYVVWSTDMNTRILPEYVVSFRWPNLPQMEGSSGLGSKLKKPSPAAT
RDMFPMLLTEIQRFVPSPKLQTLQRTYNCFKRGQMKKDQFIRFLRSHIGDNVLTTVAKKLRGY

GO Analysis
1
GO Category Biological Process
GO Term response to stress
2
GO Category Biological Process
GO Term response to endogenous stimulus
3
GO Category Biological Process
GO Term signal transduction
4
GO Category Biological Process
GO Term response to abiotic stimulus
5
GO Category Biological Process
GO Term biological_process
6
GO Category Cellular comBiological Processonent
GO Term cytoplasm
7
GO Category Molecular Function
GO Term protein binding
8
GO Category Biological Process
GO Term anatomical structure morphogenesis
9
GO Category Biological Process
GO Term post-embryonic development
10
GO Category Cellular comBiological Processonent
GO Term nucleus
11
GO Category Biological Process
GO Term response to biotic stimulus
12
GO Category Biological Process
GO Term cell death
13
GO Category Biological Process
GO Term embryo development
14
GO Category Biological Process
GO Term metabolic process
15
GO Category Biological Process
GO Term cellular process
16
GO Category Biological Process
GO Term biosynthetic process
Presence of Splice variants YES