LOC_Os03g12030

Expression Profile

RGAP LOCUS ID LOC_Os03g12030
RAP-DB ID Os03g0220100
Function 3-ketoacyl-CoA synthase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 8

2) CELLO Prediction
localization PlasmaMembrane
score 3.141

3) NUCPRED Prediction
localization Non Nuclear
score 0.26

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.64
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) WSL4|CUT1L|HMS1
Function assigned as per literature WSL4 is essential for chloroplast RNA group II intron splicing during early leaf development in rice
Subcellular localization as per literature chloroplast nucleoid
Cells used for localization experiment Rice protoplast
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28694820
Reference of localization https://www.frontiersin.org/articles/10.3389/fpls.2017.01116/full
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.126
NLS score -0.47
Protein Sequence >LOC_Os03g12030.1 protein
MPGAAGYSGSVKLKYVKLGYQYLVNHFLTLLLVPVMAATALELARMGPGELLSLWRSLQLDLVHILCSVFLVVFVGTVYFMSRPRPVYLVDYSCYKPPPS
CRVPFATFMEHTRLITDDEKSVRFQTRILERSGLGEETCLPPANHYIPPNPSMEASRAEAQLVIFSAIDDLVRRTGLKPKDIDILVVNCSLFSPTPSLSA
MIINKYKLRSNIRSFNLSGMGCSAGLISLDLARDMLQVHPNSNALVVSTEIITPNFYWGTRRDMMLPNCLFRMGAAAILLSNRRREARRAKYRLMHVVRT
HKGADDRAYRCVYEEEDEQGHSGISLSKELMAIAGDALKSNITTIGPLVLPMSEQLLFFFRLVGRKLINKKWKPYIPDFKLAFEHFCIHAGGRAVIDELQ
KNLDLSAQHVEASRMTLHRFGNTSSSSLWYELAYIEAKGRMRRGDRVWQIGFGSGFKCNSAVWKCLRTVKTPADGPWDDCIHRYPVDIPEVVKL

GO Analysis
1
GO Category Biological Process
GO Term cellular component organization
2
GO Category Biological Process
GO Term anatomical structure morphogenesis
3
GO Category Biological Process
GO Term cell growth
4
GO Category Biological Process
GO Term cellular process
5
GO Category Biological Process
GO Term lipid metabolic process
6
GO Category Cellular comBiological Processonent
GO Term endoplasmic reticulum
7
GO Category Biological Process
GO Term multicellular organismal development
8
GO Category Biological Process
GO Term metabolic process
9
GO Category Biological Process
GO Term response to stress
10
GO Category Biological Process
GO Term response to abiotic stimulus
11
GO Category Biological Process
GO Term biosynthetic process
12
GO Category Molecular Function
GO Term catalytic activity
13
GO Category Molecular Function
GO Term transferase activity
Presence of Splice variants No