LOC_Os03g09140

Expression Profile

RGAP LOCUS ID LOC_Os03g09140
RAP-DB ID Os03g0191400
Function ras-related protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 6

2) CELLO Prediction
localization Cytoplasmic
score 1.412

3) NUCPRED Prediction
localization Non Nuclear
score 0.06

4) Y-Loc Prediction
localization Cytoplasm
score 99
confidence value 0.96
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRab6a
Function assigned as per literature OsRab6a plays an important role in the regulation of Fe acquisition in rice plants by modulating physiological processes involved in Fe acquisition and root system architecture in response to Fe-deficient medium.
Subcellular localization as per literature Cytoplasm
Cells used for localization experiment tobacco leaf cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 27257291
Reference of localization https://academic.oup.com/pcp/article/57/6/1271/2461126
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.116
NLS score -0.47
Protein Sequence >LOC_Os03g09140.1 protein
MAPVVSALAKYKLVFLGDQAVGKTAIITRFMYDKFDATYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVTDRQSFLS
ISKWIEEVNTQRGGDVIIVLVGNKTDLVDKRQISTDEGEAKAQEHGAMFMETSAKAGFNIKPLFRKIAASLPGMEALSSAKQEDMVDINLRPAASGQIPS
GAEAQEEQKAGGCSC

GO Analysis
1
GO Category Biological Process
GO Term signal transduction
2
GO Category Molecular Function
GO Term nucleotide binding
3
GO Category Biological Process
GO Term transport
Presence of Splice variants YES