LOC_Os03g08900

Expression Profile

RGAP LOCUS ID LOC_Os03g08900
RAP-DB ID Os03g0188100
Function MATE efflux family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 6

2) CELLO Prediction
localization PlasmaMembrane
score 4.986

3) NUCPRED Prediction
localization Non Nuclear
score 0.03

4) Y-Loc Prediction
localization Cytoplasm
score 49
confidence value 0.23
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMATE1
Function assigned as per literature OsMATE1 and OsMATE2 regulate plant growth and development as well as negatively affect disease resistance.
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment protoplast isolated from mesophyll cells of Arabidopsis leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 24492654
Reference of localization https://www.nature.com/articles/srep03964
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.061
NLS score -0.47
Protein Sequence >LOC_Os03g08900.1 protein
MGDGRGDEEECRVALLNGGGAAKEGWQVVSGGDGKLRRRVWEESRKLWVIVAPAIFSRVVTYSMNVITQAFAGHLGDLELAAISIANTVVVGFNFGLMLG
MASALETLCGQAFGAKKYHMMGVYMQRSWIVLLACAVLLLPMYIYAEDVLLLTGQPPELSAMAGRVSVWFIPLHLSFAFLFPLQRFLQCQMKNFASAAAS
GVALCVHVAISWLLVSRFRFGLVGIALTLNFSWWATAAMLFAYVACGGCPETWNGLSLEAFAGCHAMLLTEFVCLICSLENWYYRILILLTGNLKNAAIA
VDALSICMTINAWELMIPLAFFAGTGVRVANELGAGNGKGARFATIVSSVTSLVIGLFFWVLIVGLHDKFALIFTSSDVVLDAVDNLSVLLAFTILLNSI
QPVLSGVAVGSGWQSMVAYVNIGTYYLIGIPMGILLGWLFKLGVLGIWAGMIGGTAVQTLILAIITIRCDWDKEAMIASTRMDKWSQVR

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Cellular comBiological Processonent
GO Term membrane
3
GO Category Biological Process
GO Term cellular process
4
GO Category Biological Process
GO Term ripening
5
GO Category Molecular Function
GO Term transporter activity
Presence of Splice variants No