LOC_Os03g08850

Expression Profile

RGAP LOCUS ID LOC_Os03g08850
RAP-DB ID Os03g0187500
Function AUXIN SIGNALING F-BOX 2, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 4

2) CELLO Prediction
localization Nuclear
score 1.479

3) NUCPRED Prediction
localization Non Nuclear
score 0.24

4) Y-Loc Prediction
localization Nuclear
score 84.03
confidence value 0.62
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsAFB6
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID 30232356
Reference of localization https://www.nature.com/articles/s41598-018-32450-x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.104
NLS score 0.04
Protein Sequence >LOC_Os03g08850.1 protein
MSEEDDDQPPPLPAQKRPRASPPPDQVLDNVLETVLQFLDSARDRCAASLVCRSWSRAESATRASVAVRNLLAASPARVARRFPAARRVLLKGRPRFADF
NLLPPGWAGADFRPWAAAVAAAAFPALASLFLKRITVTDDDLDLVSRSLPASFRDLSLLLCDGFSSAGLASIASHCRGLRVLDVVDCEMNDDDDEVVDWV
AAFPPGTTDLESLSFECYVRPVSFAALEALVARSPRLTRLGVNEHVSLGQLRRLMANTPRLTHLGTGAFRPGDGPEDVGLDIEQMASAFASAGRTNTLVS
LSGFREFEPEYLPTIAAVSGNLTNLDFSYCPVTPDQFLPFIGQCHNLERLYVLDSVRDEGLQATARTCKKLQVLHVLPLNALEDADELVSEVGLTAIAEG
CRGLRSTLYFCQSMTNAAVIAISQNCVDLKVFRLCIMGRHQPDHVTGEPMDEGFGAIVRNCSKLTRLSTSGHLTDRAFEYIGKYAKSLRTLSVAFAGDSN
LALQHILQGCSKLEKLEIRDCPFGDAGLLSGMHHFYNMRFLWMSGCNLTLQGCKEVARRLPRLVVELINSQPENERTDSVDILYMYRSLEGPREDVPPFV
KIL

GO Analysis
1
GO Category Biological Process
GO Term protein modification process
2
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants No