LOC_Os03g08470

Expression Profile

RGAP LOCUS ID LOC_Os03g08470
RAP-DB ID Os03g0183000
Function AP2 domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 9

2) CELLO Prediction
localization Nuclear
score 2.06

3) NUCPRED Prediction
localization Non Nuclear
score 0.53

4) Y-Loc Prediction
localization Nuclear
score 99.77
confidence value 0.54
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category AP2-EREBP/ERF

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRAF|OsLG3
Function assigned as per literature OsLG3 is a positive regulator of grain length
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion peel
NUCLEAR or Not Nuclear NUCLEAR
PMID 28385155
Reference of localization https://bmcbiol.biomedcentral.com/articles/10.1186/s12915-017-0365-7
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.126
NLS score 0.44
Protein Sequence >LOC_Os03g08470.1 protein
MCGGAILAEFIPAPSRAAAATKRVTASHLWPAGSKNAARGKSKSKRQQRSFADVDDFEAAFEQFDDDSDFDDAEEEDEGHFVFASKSRVVAGHDGRAAAR
AASKKKRGRHFRGIRQRPWGKWAAEIRDPHKGTRVWLGTFNTPEEAARAYDVEARRLRGSKAKVNFPATPAAARPRRGNTRATAVPPPATAPAAAPPRGL
KREFSPPAETALPFFTNGFVDLTTAAAPPPAMMMTSSFTDSVATSESGGSPAKKARSDDVDSSEGSVGGGSDTLGFTDELEFDPFMLFQLPYSDGYESID
SLFAAGDANSANTDMNAGVNLWSFDDFPIDGALF

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES