LOC_Os03g07140

Expression Profile

RGAP LOCUS ID LOC_Os03g07140
RAP-DB ID Os03g0167600
Function male sterility protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 10.5

2) CELLO Prediction
localization Chloroplast
score 3.096

3) NUCPRED Prediction
localization Non Nuclear
score 0.02

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.67
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) DPW
Function assigned as per literature DPWs participate in a conserved step in primary fatty alcohol synthesis for anther cuticle and pollen sporopollenin biosynthesis in monocots and dicots.
Subcellular localization as per literature Plastids
Cells used for localization experiment protoplasts isolatedfrom etiolated rice stems
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 21705642
Reference of localization http://www.plantcell.org/content/plantcell/early/2011/06/22/tpc.111.087528.full.pdf
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.109
NLS score -0.04
Protein Sequence >LOC_Os03g07140.1 protein
MGMSSCVNLSRVAAAAAGRRPGFAGELGGRRGHGRSVLPVVAALPVRRKGSGCGVACCVSSSSSSSVHGKNSAAAAEGHAGGIGIAEFLGGKNFLITGGT
GFLAKVLIEKILRTNPDVGKIYVLIKAKDGDAALKRLHNEVVDTELFSRLQEIHGKDYHSFAARKLVPVVGDVREANVGIAPELAGVIADEVDIIVNSAA
NTTFDERYDVAMDINTVGPFRIMSFAQRFRRLKLFLQVSTAYVNGQRQGVVLEKPFRLGDTIAKELGSPDSSQHKNTMLDIEAEIKLAFDHRRHGDDSAS
FSEEMKELGLERAKLHGWQDTYVFTKAMGEMVINSMRGDIPVVTIRPSVIESTWRDPFPGWMEGNRMMDPVVLYYGKGQLSGFLADPEGVLDVVPADMVV
NATLASMAKHGRGGAAAAAAAAEGMHVYHVASSTVNPLAFGDLSRFLFQHFTGSPYSDAAGRPIHVPPMRLFDTMEQFASYVETDALLRAGRLAGAGAGA
GDERVSQRLRELCAKSVEQTIYLGSIYQPYTFYGGRFDNGNTEALIGEMSEEEKARFHFDVRSIEWTDYITNVHIPGLRKHVMKGRGVGGGSGASSSSNA
SLLAGASV

GO Analysis
1
GO Category Molecular Function
GO Term catalytic activity
2
GO Category Biological Process
GO Term anatomical structure morphogenesis
3
GO Category Biological Process
GO Term cellular component organization
4
GO Category Biological Process
GO Term multicellular organismal development
5
GO Category Biological Process
GO Term cellular process
6
GO Category Biological Process
GO Term metabolic process
7
GO Category Biological Process
GO Term cell cycle
8
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No